Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33890 295 / 3e-98 unknown protein AT2G14850 253 / 1e-82 unknown protein AT2G24530 174 / 8e-51 unknown protein AT4G31440 161 / 6e-46 unknown protein AT5G67410 152 / 1e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G090400 [exp] 564 / 0 AT4G33890 318 / 2e-107 unknown protein Potri.009G090500 [exp] 517 / 0 AT4G33890 305 / 4e-102 unknown protein Potri.001G296300 [exp] 509 / 0 AT4G33890 325 / 2e-110 unknown protein Potri.018G005700 [exp] 195 / 2e-58 AT2G24530 443 / 8e-155 unknown protein Potri.006G274800 [exp] 192 / 1e-57 AT2G24530 415 / 1e-143 unknown protein Potri.003G187400 [exp] 172 / 2e-50 AT2G24530 229 / 7e-72 unknown protein Potri.001G037500 [exp] 162 / 1e-46 AT2G24530 236 / 2e-74 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002119 [exp] 329 / 1e-111 AT4G33890 297 / 2e-99 unknown protein Lus10011423 [exp] 325 / 5e-110 AT4G33890 294 / 3e-98 unknown protein Lus10011422 [exp] 274 / 2e-89 AT2G14850 278 / 5e-92 unknown protein Lus10026942 [exp] 202 / 3e-61 AT2G24530 351 / 7e-119 unknown protein Lus10020146 [exp] 195 / 8e-59 AT2G24530 346 / 4e-117 unknown protein Lus10042444 [exp] 192 / 7e-58 AT2G24530 386 / 9e-133 unknown protein Lus10026225 [exp] 154 / 4e-43 AT2G24530 347 / 1e-117 unknown protein Lus10002120 [exp] 118 / 1e-32 AT2G14850 112 / 2e-31 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12767 [poplar] [flax] SAGA-Tad1 Transcriptional regulator of RNA polII, SAGA, subunit
Representative CDS sequence Show only first row Show all	>Potri.001G296200.1 pacid=42787720 polypeptide=Potri.001G296200.1.p locus=Potri.001G296200 ID=Potri.001G296200.1.v4.1 annot-version=v4.1 ATGACACTATCCAATCAAACATCTATGCGAATTGATACTTTAGAGCTCAAATCCTTGATTGTTAAAAAGATCGGGCAGCAAAGAGCAGATAAATACTTCT ATCAACTTACAAGATTACTTAGTTCGAAGGTTACCAAGTGTGAATTTGATAAATTTTGTGTCGGGATTATTGGAAGAGAAAATATCCCTATTCACAACCG ATTTATTCGATCTATTCTCAAGAATGCTTGCTGTGCAAAAGTTCTACCATCCAAAGGTTTTAGAAGAGGGGGAAGTAACCTCACTGTTGCTACTGCAAAT GGATACCAGAAAAACAGTCTTCAATTGCTTTATGGAGATGCCTTGCCTTCTTCCCCTCGCAAGGGAAGGTCACCTGTCAGTCGAGATCGCAAGTTTGGGG ACCACCCAAATCCTCCAGACCCACTTGAAAAGCCTCAAAGCGTAGCATGTGAGGAATTGAATGCAGGGGCACAAGAACAACAGAGTGCTACAGAGTTGCT TTCACTTGGTAGTAGACCCCCAGTGGAAGTTGTTTCTGTAGAAGAGGGAGAAGAGGTTGAGCAGATGACAGGAAGCCCCTGTGTTCAGAGTAGAAGCCCG GTCACTGCTCCTCTTGGTATTTCCATGAATTTCAGTGGATCTCGGAAAGCTCTTTCAAATGCATCTTTAAGCAGTGATTACCTTAAAGGGACTTGTCTAA GAAGTGGCGGACTACCTGATTCTAGATCATTAAGACATCGGTTGGAGCGGAAGTTGGAGATGGAGGGCATTAGCATGTCTTTGGACTGTGTTAACCTGTT GAATAATGGTTTAGATGCGTATGTGAAGAGGTTGATTGAGCCTTGTATGGCTTTAGCGGGTTCAAGGCATGGAAATGAGTACTTGAAAAGAGCAAGTGGT CAGTTCGTTCCTGGTTTGAATGGGGCGTTACCTGGGAAATACATCCATAGAGAGACAGAATCAGTTTATGCATCCATGTTGGATTTTCGTGTGGCAATGG AGTCAAATCCCCAAATACTCGGAGAGGATTGGCCCACACAACTTGAGAAAATTTCCTTGCTTGGGTTTGAAGAGTGA
AA sequence Show only first row Show all	>Potri.001G296200.1 pacid=42787720 polypeptide=Potri.001G296200.1.p locus=Potri.001G296200 ID=Potri.001G296200.1.v4.1 annot-version=v4.1 MTLSNQTSMRIDTLELKSLIVKKIGQQRADKYFYQLTRLLSSKVTKCEFDKFCVGIIGRENIPIHNRFIRSILKNACCAKVLPSKGFRRGGSNLTVATAN GYQKNSLQLLYGDALPSSPRKGRSPVSRDRKFGDHPNPPDPLEKPQSVACEELNAGAQEQQSATELLSLGSRPPVEVVSVEEGEEVEQMTGSPCVQSRSP VTAPLGISMNFSGSRKALSNASLSSDYLKGTCLRSGGLPDSRSLRHRLERKLEMEGISMSLDCVNLLNNGLDAYVKRLIEPCMALAGSRHGNEYLKRASG QFVPGLNGALPGKYIHRETESVYASMLDFRVAMESNPQILGEDWPTQLEKISLLGFEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33890			unknown protein		Potri.001G296200 [exp]	0	1
AT5G07610			F-box family protein (.1)		Potri.005G043500 [exp]	5.19	0.8141
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188350 [exp]	6.63	0.8109
AT4G27290			S-locus lectin protein kinase ...		Potri.001G413700 [exp]	7.07	0.8135
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.002G106800 [exp]	7.54	0.8113
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G155600 [exp]	14.00	0.7742	CYP716C1
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	14.49	0.7868
AT4G08310			unknown protein		Potri.005G176400 [exp]	16.24	0.7781
AT3G05345			Chaperone DnaJ-domain superfam...		Potri.005G031466 [exp]	16.73	0.8004
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047200 [exp]	18.16	0.8068
AT2G35610		XEG113	xyloglucanase 113 (.1)		Potri.004G235800 [exp]	19.87	0.8095

Compare expression of checked genes

Potri.001G296200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.