Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49870 425 / 3e-137 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G090900 [exp] 971 / 0 AT1G49870 451 / 4e-147 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013902 [exp] 468 / 2e-151 AT1G49870 454 / 2e-145 unknown protein Lus10002116 [exp] 418 / 6e-136 AT1G49870 457 / 4e-150 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G296700.2 pacid=42789835 polypeptide=Potri.001G296700.2.p locus=Potri.001G296700 ID=Potri.001G296700.2.v4.1 annot-version=v4.1 ATGATTTGGCAATCAATGGATGTTGGGTGCTTGGACTTGGGATGCATATCTGTGTTAGACAAGAACAGCGGCCACACTGTTCTTGATTCTGTTGACAAAG AATGTGATTCGAGTGAGAAGGTTTCTTCGGGTTCTAAGCCCGGAAAGAATAAATCACCAAAAGGGACTGGCCAGTCAGCATTGAATGCTCTAAACAAATT TACATCCCAAATTAAGAAGCCTTCTCACCGTAAGAATTCTCCCATCAACTGGTTCCCACGCAAAAAGGGGGACTCCTACTTGCAGAGGAAAATCAAAATG CTGCAGGAATTAGATGGAATGAGTATGACTCTTGATGAGGCGCTTGGTGATTCAAATCCACATTATTCAAGAGTACTGAGAGAGAAAATTGCAGCAAGAG AGGCCGCAAACAAAGCGGTGGAGGCTCGAAAAGCTGCACTGGTGGAAGCATCTTGGTGTCGGATACTAAAAGCAGCCAGGATCCAAAGCAAGGAAGCAGA AGAGCTGCTGCTTAAGGCAGAGAAAACTGCAGCCGAAGCTTTCGAAGTTGCAAAAGCTATGGAAGTAATCATGTTCGATATACCAAATAGCCCTCAAGTG TCCTGTCAAGTTCAAACATCTACTGTTAGTGGAGGGGGATCTACTCCTTATACGGCCACAACATCTTTTGCAAGTGTATTTGAGGTAGATAAACAAGTAG CTGCAGCAGTCAAAACTGCATTTACCAGGCTTGCAAACTGTCCTACTTTTGACAATGAAGAATTTAAAGATCTGCTTGATAGTAATTCTGAATTTTCAGA ATATGAATTAGAGTCTGGGTCAGAATTTGAACCAATATCTCAAGACATGGATTTTACGTTGCCGATTCCTGGGACAAGACTCAAGAAATATAAGAGGAGA CAGTCTTTGGACACGTTGAATATGACCAAGATTGTGGATATGATGTTTGAGAGGCTTAGATGTTTGAATGAAGATGAGCTTTCTTCTCTGGCAACAATTG TTGCTACATGTGGTTTAAATGCTGCCTTAGCAGAAGTGGAAAACAGCAAGGTGCATGATCCAGGCTCTGCTGCTGATTATACCTCGAGTCAAGCTGTTAA CCGTCACCGAAGAATGTCTTCCGTTGGTTCAGGAACAATAAGAAGGAACGAGGTTCAGTTGGAACTCCCAAGTCTAGACAAGTTCTTGGTCAAGCACGTG TCAAAACTTGAAAGAGAAGTGCAAGAAGCTAAGGATAGGAGGAAGAACGAACTCATGGAAGGGAATCAAGGGAATACAGATACAACTGGTGATGGAAAGG TCACTTTAGATGGTAAAAAGACTTCATCCGAGAGTATTTCTGATCTGGGAACTATTCTTGTGAAGCATTCCTCAAAGTTAGAGAAAGAGATTGAAGAGGC AAAGAAAAATACGAGGAAAAGTTTCAAAATTATTTCAAAGAAACTGGCAAGTGACTTAACCATATCCGAGGGCATTTCTGACCTGGGAAGTATGTTGATT AAGCATCCATCGAAGCTTGAAAAGGAAGTTCAGGAGATGAGAAAAAACTCAGGAAAAACGTTTGACATCGATGGCAAGGAACTTGGACGTCGAGCACCAA ACTCTCCAAGAAAATATGTTCCAGAAGTACCAAGCCTGGATAAAATTCTGGTTAAACATGTGTCAAGACTAGAAAAAGAGGTTCAAGAAGCAAAAAACAG AAAGAAAAATGAATCCGTTGAAGAAAGAAGATTAGAGAAAGAAAATGTGAACTTGAATAAAGAAGAGAATGGACTGGAAACGGAGAAAACGCAAGCATTG TCATTGGGAAGCAGCTGTGGAAATTACAGGCACCAAAACAAATTCGGAGGAAATGCTACTGCAGATTGTGAGGGCTTGGACAGAGTTCTGGTCAAGCATA GCTCTAGACTAGAGAAAGAGAAAATGGCATTGAGTCTAAACCAAGAAGAGATGCATGTGGAAAGAAGTGGCAGAAAAGCTCATATGCAGACGAATGAAGG TGGTCTGGACCAAATTTTGGTTAAACATAAATCAAAGCTCGAGAGAGAGAAGATGGCTTCTGCTCAGCAATCCGGAGAAGAAGTGCCAGCTAGGCTCTCC GTATCTCGTAGAGAAGCAAGGGAGAGAGAGTTGCAAGAGGCATGGGGAGGGTTGAGTTTAGGAAACTCCATCCGCCCACATCTCTCCAGACTTGAAAGGG ACAAGGCTGCTTGGATTAAAGCTGAAGAGGAGGCAAGAAGGCGAGCCATGGAGGAGGTGGTGTAA
AA sequence Show only first row Show all	>Potri.001G296700.2 pacid=42789835 polypeptide=Potri.001G296700.2.p locus=Potri.001G296700 ID=Potri.001G296700.2.v4.1 annot-version=v4.1 MIWQSMDVGCLDLGCISVLDKNSGHTVLDSVDKECDSSEKVSSGSKPGKNKSPKGTGQSALNALNKFTSQIKKPSHRKNSPINWFPRKKGDSYLQRKIKM LQELDGMSMTLDEALGDSNPHYSRVLREKIAAREAANKAVEARKAALVEASWCRILKAARIQSKEAEELLLKAEKTAAEAFEVAKAMEVIMFDIPNSPQV SCQVQTSTVSGGGSTPYTATTSFASVFEVDKQVAAAVKTAFTRLANCPTFDNEEFKDLLDSNSEFSEYELESGSEFEPISQDMDFTLPIPGTRLKKYKRR QSLDTLNMTKIVDMMFERLRCLNEDELSSLATIVATCGLNAALAEVENSKVHDPGSAADYTSSQAVNRHRRMSSVGSGTIRRNEVQLELPSLDKFLVKHV SKLEREVQEAKDRRKNELMEGNQGNTDTTGDGKVTLDGKKTSSESISDLGTILVKHSSKLEKEIEEAKKNTRKSFKIISKKLASDLTISEGISDLGSMLI KHPSKLEKEVQEMRKNSGKTFDIDGKELGRRAPNSPRKYVPEVPSLDKILVKHVSRLEKEVQEAKNRKKNESVEERRLEKENVNLNKEENGLETEKTQAL SLGSSCGNYRHQNKFGGNATADCEGLDRVLVKHSSRLEKEKMALSLNQEEMHVERSGRKAHMQTNEGGLDQILVKHKSKLEREKMASAQQSGEEVPARLS VSRREARERELQEAWGGLSLGNSIRPHLSRLERDKAAWIKAEEEARRRAMEEVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49870			unknown protein		Potri.001G296700 [exp]	0	1
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Potri.008G010900 [exp]	1.41	0.9439
AT1G30690			Sec14p-like phosphatidylinosit...		Potri.001G461400 [exp]	3.00	0.9111
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G131500 [exp]	7.87	0.9320
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.008G195800 [exp]	7.93	0.9259
AT5G55820		WYR	WYRD, unknown protein		Potri.001G368200 [exp]	9.74	0.8825
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Potri.010G074900 [exp]	10.00	0.8821
AT5G01420			Glutaredoxin family protein (....		Potri.008G016100 [exp]	13.41	0.9228
AT5G27440			unknown protein		Potri.013G024500 [exp]	15.49	0.8859
AT3G07610		IBM1	increase in bonsai methylation...		Potri.005G082901 [exp]	15.49	0.8507
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.011G064500 [exp]	17.54	0.8610

Compare expression of checked genes

Potri.001G296700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.