Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49850 107 / 2e-27 RING/U-box superfamily protein (.1) AT2G15580 69 / 6e-14 RING/U-box superfamily protein (.1.2) AT3G18930 64 / 1e-11 RING/U-box superfamily protein (.1.2) AT1G68070 63 / 3e-11 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G20823 61 / 5e-11 RING/U-box superfamily protein (.1) AT1G35630 61 / 1e-10 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35625 59 / 3e-10 RING/U-box superfamily protein (.1) AT3G55530 59 / 4e-10 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT3G58720 59 / 6e-10 RING/U-box superfamily protein (.1.2) AT1G18760 58 / 6e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G091200 [exp] 385 / 5e-136 AT1G49850 108 / 3e-28 RING/U-box superfamily protein (.1) Potri.007G118000 [exp] 67 / 8e-13 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.006G190300 [exp] 64 / 6e-12 AT2G15580 170 / 2e-53 RING/U-box superfamily protein (.1.2) Potri.018G114500 [exp] 63 / 9e-12 AT2G15580 161 / 3e-50 RING/U-box superfamily protein (.1.2) Potri.007G107000 [exp] 63 / 2e-11 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.004G122000 [exp] 60 / 6e-11 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.005G062400 [exp] 61 / 1e-10 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.010G201500 [exp] 61 / 1e-10 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.001G435800 [exp] 61 / 1e-10 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002113 [exp] 226 / 5e-73 AT1G49850 133 / 2e-37 RING/U-box superfamily protein (.1) Lus10013899 [exp] 82 / 2e-17 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10000513 [exp] 60 / 2e-10 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10034587 [exp] 60 / 5e-10 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10000333 [exp] 59 / 8e-10 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10030728 [exp] 58 / 9e-10 AT1G20823 209 / 6e-69 RING/U-box superfamily protein (.1) Lus10037264 [exp] 59 / 1e-09 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10001421 [exp] 59 / 1e-09 AT2G42770 274 / 7e-90 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10014823 [exp] 59 / 1e-09 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10002706 [exp] 58 / 1e-09 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G297000.1 pacid=42793663 polypeptide=Potri.001G297000.1.p locus=Potri.001G297000 ID=Potri.001G297000.1.v4.1 annot-version=v4.1 ATGACGAGCGCTTCGGAGTTATTTTATCAAAGAAGGTCCCGTGTGAGCCGAGCCGATTCCGATCTAGGGCTCGAGCCTTCTCTCTCTGACCGTAGTTTTT ACCAAAATTACAATCGCCGCCATCACCATAATCATAATCATAACCATCGTCATGATTTGGACGGCTGTGATCCTCTCCGCAGACCGCCCCACGTGCGGAC CCCCTGCCACCGGCTGTCATCCCCATCTGAACGTGCCTCAGCTCGACTGGATCAAGATACCGACCAGTTTGTACCAAGTAACAATCTCACCGCTGAAACT TTAAGCCGGCCAAGAGTGACTGGAAATGGGAGGCTTCCTGGAGCTGTGCTACTAGCAAGGGCAAGGCTTCTTGAAAGGTTAAGAGGAGTGTCACTTTCTG TAAACAGGCGAAGTGGCCCAGCTTCCTTTGGCATCTATAACAGGGAGTATACGCTTGGTGACGAATTGAGGGTTGTTGATGCAGGAGCCTGGGGAACTGA CATTTCTACAGGGTTGTTTGCTGGAGTTTCTCCTTTCAATGACTCAACCTTTCAAACCGAAAGACCTCACACCGTGCAGGAATCATGCAAGAAGAAACCG CCTGGTCTAACTCAAGATGCCCTTCAGTGTTTGCAATCAGAGGTATTTAGCTGTTTAGGGAAGGGTATTGAAGGGGGTTCATCTCCGGTGTCGCGGGATT GTAGTATATGTCTCGAGAGTTTCAGTGAAGGAGACGAGCTTATTCGTTTGCCCTGTGACCATAGATTCCACTCTGCTTGCCTGGATCCTTGGGTCCGGAC TTGTGGGGACTGCCCATATTGTAGAAGAGATATAGTTGTAAGTAATGATTGA
AA sequence Show only first row Show all	>Potri.001G297000.1 pacid=42793663 polypeptide=Potri.001G297000.1.p locus=Potri.001G297000 ID=Potri.001G297000.1.v4.1 annot-version=v4.1 MTSASELFYQRRSRVSRADSDLGLEPSLSDRSFYQNYNRRHHHNHNHNHRHDLDGCDPLRRPPHVRTPCHRLSSPSERASARLDQDTDQFVPSNNLTAET LSRPRVTGNGRLPGAVLLARARLLERLRGVSLSVNRRSGPASFGIYNREYTLGDELRVVDAGAWGTDISTGLFAGVSPFNDSTFQTERPHTVQESCKKKP PGLTQDALQCLQSEVFSCLGKGIEGGSSPVSRDCSICLESFSEGDELIRLPCDHRFHSACLDPWVRTCGDCPYCRRDIVVSND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49850			RING/U-box superfamily protein...		Potri.001G297000 [exp]	0	1
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141800 [exp]	1.73	0.6626
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.011G149300 [exp]	5.47	0.6793
AT4G16600			Nucleotide-diphospho-sugar tra...		Potri.001G158000 [exp]	6.92	0.6495
AT3G57710			Protein kinase superfamily pro...		Potri.002G004900 [exp]	28.98	0.6289
AT5G47900			Protein of unknown function (D...		Potri.014G123800 [exp]	33.24	0.5838
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.006G016200 [exp]	34.52	0.6015	GRAS52
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Potri.009G030000 [exp]	37.78	0.5818
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.016G032400 [exp]	46.36	0.5883
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014348 [exp]	47.54	0.5742
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014346 [exp]	54.22	0.5849

Compare expression of checked genes

Potri.001G297000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.