Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33920 563 / 0 Protein phosphatase 2C family protein (.1) AT3G51370 400 / 1e-138 Protein phosphatase 2C family protein (.1.2) AT5G66080 392 / 1e-135 Protein phosphatase 2C family protein (.1) AT3G12620 382 / 9e-132 Protein phosphatase 2C family protein (.1.2) AT5G06750 379 / 3e-130 Protein phosphatase 2C family protein (.1.2.3) AT4G38520 375 / 2e-128 Protein phosphatase 2C family protein (.1.2) AT3G55050 371 / 3e-127 Protein phosphatase 2C family protein (.1.2) AT3G17090 358 / 5e-122 Protein phosphatase 2C family protein (.1.2) AT5G02760 333 / 2e-112 Protein phosphatase 2C family protein (.1) AT5G02400 128 / 3e-32 PLL2 pol-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G091600 [exp] 684 / 0 AT4G33920 561 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G051900 [exp] 544 / 0 AT4G33920 460 / 1e-162 Protein phosphatase 2C family protein (.1) Potri.004G177100 [exp] 403 / 1e-139 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 402 / 3e-139 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 400 / 2e-138 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 398 / 1e-137 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.007G061100 [exp] 391 / 8e-135 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 388 / 7e-134 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.010G214700 [exp] 381 / 6e-131 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013896 [exp] 604 / 0 AT4G33920 554 / 0.0 Protein phosphatase 2C family protein (.1) Lus10002110 [exp] 582 / 0 AT4G33920 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10011521 [exp] 507 / 0 AT4G33920 483 / 2e-171 Protein phosphatase 2C family protein (.1) Lus10019302 [exp] 506 / 1e-180 AT4G33920 472 / 4e-167 Protein phosphatase 2C family protein (.1) Lus10041861 [exp] 397 / 4e-137 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 396 / 1e-136 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 395 / 3e-136 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 393 / 2e-135 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 392 / 3e-135 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 389 / 3e-134 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.001G297200.1 pacid=42791867 polypeptide=Potri.001G297200.1.p locus=Potri.001G297200 ID=Potri.001G297200.1.v4.1 annot-version=v4.1 ATGATGTTGAGATCGTGTTACAGACCGTTGGAGAGGTGTTTTGGTCGGGTAGCAGGTGGTGGTGGTGATGGATTGATGTGGCATGCGGATTTGAAACAAC ATGCTTCTGGTGATTATTCAATAGCGGTTGTCCAAGCCAATTCTAATTTAGAAGATCAAAGTCAGGTTTTTACGTCTCCGTCCGCTACTTATGTTGGTGT TTATGATGGTCATGGTGGTCCTGAAGCTTCCCGGTTTGTTAATAAACATATGTTTCCTTTCATGCATAAATTTGCTAAGGAGCATGGGGGGTTATCAGCT GATGTCATAAAGAAGGCTTTTAATGCAACTGAAGAGGAATTTTGCCATTTAGTGAAGCGATCATTACCTTTGAAGCCGCAGATTGCTTCAGTTGGATCGT GTTGTTTGGTTGGTGCAATTTCAAATGATGTGTTATATGTTGCAAATCTCGGGGATTCTAGGGCAGTTCTTGGCCGAAGAGTTGACGAGGATAAGAAAAA AACAGTAGTGGCAGAAAGGTTATCGACTGATCACAACGTTGCTGTTGAAGAGGTGAGAAAGGAGGTTGAGGCACTTCATCCTGATGATTCACATATTGTA GTCTATACTCGTGGAGTTTGGAGAATTAAGGGCATAATCCAGGTATCCAGATCCATTGGTGATGTGTATCTGAAGAAACCAGAGTTTAACAGGGACCCAA TTTATCAGCAGTTTGGTAACCCTATTCCTTTGAAACGGCCAGTAATGACAGCAGAACCTTCCATTGTTTTTAGAAAGTTGAGGTCAGAAGACTTGTTCCT GATATTTGCTTCAGATGGTCTCTGGGAACAATTAACCGACGAAGCAGCTGTAGAGATTGTTTTCAAGAACCCTAGAGCTGGGATTGCCAAGAGATTGGTT AGAGCTGCTATTCAGGAAGCTGCAAAGAAAAGAGAGATGAGATATAATGACATTAAGAAAATTGAAAAGGGAATACGAAGGCATTTTCATGATGACATCA CTGTGATTGTAATTTACCTTGATCACCAAAAAGGTTCTTCCAATGGTAGATTAAAGAACAATGCCATTGGCTGCACCAGCGCTCCAGTCGACATTTTCTC CCGTGACGCAGATCAAGCGGAGGCAGACATGCTTCAAACAATTTCTTGA
AA sequence Show only first row Show all	>Potri.001G297200.1 pacid=42791867 polypeptide=Potri.001G297200.1.p locus=Potri.001G297200 ID=Potri.001G297200.1.v4.1 annot-version=v4.1 MMLRSCYRPLERCFGRVAGGGGDGLMWHADLKQHASGDYSIAVVQANSNLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHMFPFMHKFAKEHGGLSA DVIKKAFNATEEEFCHLVKRSLPLKPQIASVGSCCLVGAISNDVLYVANLGDSRAVLGRRVDEDKKKTVVAERLSTDHNVAVEEVRKEVEALHPDDSHIV VYTRGVWRIKGIIQVSRSIGDVYLKKPEFNRDPIYQQFGNPIPLKRPVMTAEPSIVFRKLRSEDLFLIFASDGLWEQLTDEAAVEIVFKNPRAGIAKRLV RAAIQEAAKKREMRYNDIKKIEKGIRRHFHDDITVIVIYLDHQKGSSNGRLKNNAIGCTSAPVDIFSRDADQAEADMLQTIS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33920			Protein phosphatase 2C family ...		Potri.001G297200 [exp]	0	1
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Potri.012G007500 [exp]	1.00	0.8977
					Potri.017G077100 [exp]	1.41	0.8829
AT5G18150			Methyltransferase-related prot...		Potri.019G035000 [exp]	1.73	0.8637
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.008G085000 [exp]	4.47	0.8597
AT3G61790			Protein with RING/U-box and TR...		Potri.001G026200 [exp]	4.47	0.8164
AT2G04305			Magnesium transporter CorA-lik...		Potri.001G285300 [exp]	4.89	0.8274
AT1G66400		CML23	calmodulin like 23 (.1)		Potri.004G089400 [exp]	5.09	0.7675
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.011G131700 [exp]	5.29	0.8008
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.014G052500 [exp]	5.65	0.7915
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.019G049700 [exp]	6.32	0.7839	PtrCSLD1,CESA3.2

Compare expression of checked genes

Potri.001G297200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.