Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02860 1129 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 554 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 283 / 1e-82 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G31400 256 / 1e-72 GUN1 genomes uncoupled 1 (.1) AT1G09900 238 / 2e-68 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G06920 238 / 2e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 232 / 3e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 234 / 1e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 232 / 2e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 231 / 8e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G092100 [exp] 1467 / 0 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 581 / 0 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 264 / 6e-76 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.001G276500 [exp] 258 / 2e-74 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G043101 [exp] 256 / 4e-72 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 256 / 1e-71 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.015G105400 [exp] 253 / 4e-71 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 243 / 1e-69 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G123900 [exp] 247 / 2e-68 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013894 [exp] 1027 / 0 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 1023 / 0 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020002 [exp] 556 / 0 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 550 / 0 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 519 / 1e-172 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 510 / 5e-169 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 268 / 2e-77 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10036020 [exp] 250 / 5e-71 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 248 / 4e-69 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022290 [exp] 238 / 2e-67 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.001G297300.2 pacid=42789720 polypeptide=Potri.001G297300.2.p locus=Potri.001G297300 ID=Potri.001G297300.2.v4.1 annot-version=v4.1 ATGACAGAGAAACTATCTCTGCCTCTTCTCCTCTCGAACCCACCTCCAACAAAACCCTCACTCCCTATCCAAACTCACGTCCACCATCAACAGCTAAAAC CAACAACGCCCACTTCACCACCGCCTCAGCATGGCACATCGCTTATGCAGGACTTCCTTTTTAAGCAAAGCTCTGATCCTTCCAAACCCATCACCTCACA AACCCAACCTGACCCATTTCCCATCCCAAGAGCCCGAACCCGAATTGGCAAGGCCCGTGACAGCAACCGTGGCAAACCCTGGACCCACCATCGCCTCTCC CTTCAAGGTCAGCGAGTTCTAGATTCCTTAAATGACCCATCTTTTGAAAGCAGTGAATTAGATAAGATCTTGAGTCTTTTACTTGATTACCATAAAGAAG AGTTGAGTTTAAGTAGCGGTGGCAAGGAGGGGTTAAGTAATGATGTTTTGGGTGTTATTAAGGGTTTAGGGTTTTATAAAAAACGTGACCTGGCTATGAG TGTGTTTGTGTGGTTTAAGAATAGGAATGATTGTGGATCTGTTTTGAGTAATTCAGCTGTGGCTGTGATTATTAGCATGCTTGGTAAAGAAGGAAAAGTT TCAGTGGCAGCATCTTTGTTGAATGATTTGCATAAAGATGGGTTTGGACTTGATGTTTATGCTTATACATCTTTAATCACTGCTTGTGTTAGTAATGGAA GGTATAGGGAAGCTGTGATGGTGTTTAAGAAGATGGAGGAAGAAGGTTGCAAACCAACTTTGATTACTTATAATGTGATTTTGAATGTGTATGGGAAAAT GGGCATGCCTTGGAATAAGATTAAAGGTCTGTTTGAGGGAATGAAGAATGCTGGAGTTTTGCCAGATGAGTATACATATAATACGCTTATAACTTGTTGT AGACGAGGATCTTTGCATGAAGAAGCTGCTGCGGTTTTCAAGGATATGAAATCGATGGGTTTTGTGCCTGACAAGGTCACTTATAATGCGTTATTGGATG TTTATGGGAAGTCAAGGCGGACTAAGGAGGCCATGGAGGTATTAAGAGAAATGGAGGTTAATGGATGTTCACCAAGCATTGTGACTTACAATTCCTTGAT ATCTGCCTATGCAAGAGATGGTCTGTTGAAAGAAGCAGTGGAGCTTAAAAACCAGATGGTTGAAGGTGGGATTAACCTGGATGTTTTTACTTACACTACG CTTTTGTCAGGATTTGTGAGGGCTGGTAAGGACGAGTCTGCAATGAGGGTTTTTGCTGAAATGAGAGCAGCAGGTTGCAAACCTAATATTTGTACTTTCA ATGCCTTGATTAAGATGCATGGTAACAGGGGAAAGTTTGCAGAAATGATGAAGGTTTTTGAGGAGATAAAAAATTCCTGTTGCGTACCGGATATTGTTAC TTGGAATACCCTTTTAGCAGTGTTTGGGCAAAATGGGATGGACTCAGAAGTGTCTGGAGTTTTCAAGGAGATGAAGAGGGCTGGCTTTGTACCTGAGAGG GACACTTACAACACCCTAATCAGCTCGTACAGCCGGTGTGGATCATTTGACCAAGCCATGGATGTATACAAGAGAATGCTGGAAGCTGGGATTACACCTG ATCTTTCCACCTATAATGCTGTTTTGGCAGCATTAGCTCGAGGAGGGCTCTGGGAACAGTCAGAGAAAATACTCGCTGAAATGAAAGATGGTCGGTGCAA GCCCAATGAGCTGACATACTGTTCTTTGCTTCATGCTTATGCCAATGGCAAGGAGATTGGGCGGATGCTTGCTCTTGCGGAGGAGATATGCTCTGGTGTA ATTGAACCCCATGCCGTACTCTTGAAGACCCTTGTTTTAGTTAATAGTAAATGTGACCTACTGGTAGAAGCTGAGGTTGCATTCCTGGAGTTGAAGAGAA AAGGTTTTTCACCTGACTTGAGTACTCTGAATGCCATGATTTCTATATATGGCAGGAGGCAGATGTTTACCAAAACAAATGAGATCTTGAACTTCATGAA TGAGAGTGGATTCACTCCTAGCTTGGCAACTTACAATAGTTTGATGTATATGCACAGCCGATCAGAGAATTTTGAGAGATCAGAAGAAGTTTTGAAAGAA ATCCTAGCAAAGGGAATAAAACCAGATACAATTTCTTACAACACCGTAATTTTTGCATATTGTCGAAATGGGAGGATGAAAGAGGCTTCACGGATATTCT CAGAAATGAGGGAATCTGGGCTTGTTCCAGATGTAATCACTTATAATACTTTTGTTGCAAGTTATGCAGCTGATTCAATGTTTGAGGACGCTATTGATGT TGTGCGATACATGATCAAGCATGGCTGTAAACCGAACCAAAATACATATAACTCAGTTGTCGATGGATACTGTAAACATAACCATCGGGATGATGCAATC ATGTTCATAAGCAGTCTTCACGAGCTTGATCCACATATTTCTAGGGAGGAAAAGTGCAGGTTATCAGAACGTTTAACCAAGTGGTCATAG
AA sequence Show only first row Show all	>Potri.001G297300.2 pacid=42789720 polypeptide=Potri.001G297300.2.p locus=Potri.001G297300 ID=Potri.001G297300.2.v4.1 annot-version=v4.1 MTEKLSLPLLLSNPPPTKPSLPIQTHVHHQQLKPTTPTSPPPQHGTSLMQDFLFKQSSDPSKPITSQTQPDPFPIPRARTRIGKARDSNRGKPWTHHRLS LQGQRVLDSLNDPSFESSELDKILSLLLDYHKEELSLSSGGKEGLSNDVLGVIKGLGFYKKRDLAMSVFVWFKNRNDCGSVLSNSAVAVIISMLGKEGKV SVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCC RRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAVELKNQMVEGGINLDVFTYTT LLSGFVRAGKDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPER DTYNTLISSYSRCGSFDQAMDVYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKILAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGV IEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMISIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKE ILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAI MFISSLHELDPHISREEKCRLSERLTKWS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.001G297300 [exp]	0	1
AT5G02860			Pentatricopeptide repeat (PPR)...		Potri.009G092100 [exp]	1.00	0.9616
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.002G010900 [exp]	3.74	0.9414
					Potri.017G079000 [exp]	6.32	0.9336
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.019G093400 [exp]	9.48	0.9369
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Potri.012G091800 [exp]	10.39	0.9379
AT3G62550			Adenine nucleotide alpha hydro...		Potri.014G122000 [exp]	14.38	0.9331
AT5G05280			RING/U-box superfamily protein...		Potri.019G130100 [exp]	16.06	0.9338
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.008G106500 [exp]	16.12	0.8967
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.016G006800 [exp]	17.49	0.9399
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G007932 [exp]	19.97	0.9247

Compare expression of checked genes

Potri.001G297300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.