Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14880 142 / 3e-44 SWIB/MDM2 domain superfamily protein (.1) AT4G34290 138 / 7e-43 SWIB/MDM2 domain superfamily protein (.1) AT2G35605 100 / 2e-28 SWIB/MDM2 domain superfamily protein (.1) AT3G03590 100 / 1e-27 SWIB/MDM2 domain superfamily protein (.1) AT1G31760 91 / 1e-24 SWIB/MDM2 domain superfamily protein (.1) AT1G49520 76 / 9e-17 SWIB complex BAF60b domain-containing protein (.1) AT4G22360 74 / 3e-16 SWIB complex BAF60b domain-containing protein (.1) AT3G19080 73 / 1e-15 SWIB complex BAF60b domain-containing protein (.1) AT4G26810 68 / 2e-15 SWIB/MDM2 domain superfamily protein (.1.2) AT3G48600 61 / 2e-12 SWIB complex BAF60b domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G092200 [exp] 223 / 2e-76 AT2G14880 169 / 7e-55 SWIB/MDM2 domain superfamily protein (.1) Potri.013G070600 [exp] 107 / 1e-30 AT2G35605 108 / 2e-31 SWIB/MDM2 domain superfamily protein (.1) Potri.004G145200 [exp] 77 / 3e-17 AT1G49520 308 / 6e-103 SWIB complex BAF60b domain-containing protein (.1) Potri.009G106700 [exp] 76 / 5e-17 AT1G49520 301 / 5e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.005G134500 [exp] 74 / 3e-16 AT3G19080 226 / 3e-70 SWIB complex BAF60b domain-containing protein (.1) Potri.015G137600 [exp] 69 / 8e-16 AT4G26810 181 / 1e-60 SWIB/MDM2 domain superfamily protein (.1.2) Potri.006G010700 [exp] 71 / 5e-15 AT4G22360 303 / 2e-100 SWIB complex BAF60b domain-containing protein (.1) Potri.016G013400 [exp] 69 / 1e-14 AT4G22360 301 / 1e-99 SWIB complex BAF60b domain-containing protein (.1) Potri.007G039350 [exp] 52 / 5e-09 AT3G19080 118 / 4e-32 SWIB complex BAF60b domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013893 [exp] 175 / 2e-57 AT2G14880 143 / 7e-45 SWIB/MDM2 domain superfamily protein (.1) Lus10002106 [exp] 114 / 4e-34 AT4G34290 109 / 2e-32 SWIB/MDM2 domain superfamily protein (.1) Lus10005667 [exp] 98 / 5e-27 AT3G03590 118 / 4e-35 SWIB/MDM2 domain superfamily protein (.1) Lus10009333 [exp] 75 / 1e-16 AT3G19080 266 / 4e-87 SWIB complex BAF60b domain-containing protein (.1) Lus10019640 [exp] 74 / 4e-16 AT3G19080 256 / 2e-81 SWIB complex BAF60b domain-containing protein (.1) Lus10016581 [exp] 67 / 9e-14 AT4G22360 190 / 1e-55 SWIB complex BAF60b domain-containing protein (.1) Lus10014892 [exp] 67 / 1e-13 AT4G22360 243 / 2e-76 SWIB complex BAF60b domain-containing protein (.1) Lus10038799 [exp] 65 / 2e-13 AT4G26810 160 / 1e-50 SWIB/MDM2 domain superfamily protein (.1.2) Lus10034774 [exp] 59 / 6e-12 AT2G35605 68 / 6e-16 SWIB/MDM2 domain superfamily protein (.1) Lus10033312 [exp] 59 / 6e-12 AT2G35605 68 / 6e-16 SWIB/MDM2 domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02201 [poplar] [flax] SWIB SWIB/MDM2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G297400.1 pacid=42787947 polypeptide=Potri.001G297400.1.p locus=Potri.001G297400 ID=Potri.001G297400.1.v4.1 annot-version=v4.1 ATGGAAATTTCTTCAAGGACTTGCTTTCCTTTCCTATCCACCGAAACGGTGCCGCTTCTCAAGCCTCCATTTCATACATCCTCTCCTTCTCTCAGGATTC TGGCTGCGCGTCCTGTTAACCTGCGCATGGGGCGTACTGTTGTTACCTGCGCTACGGCGTCGACTGGCAACCGCGCTCCCAGCGGCATAATGAAGCCGAA GCGAGTCTCACCTGAAATGGCAGACTTTGTTGGCGCTCCTGAGGTCTCTCGCACCCAGGTTCTCAAGCTTATCTGGGCCCATATAAAGGAGCGCAATCTT CAGGACCCTAGTAACAAGAAGAACATAATTTGCGACGAGAAGTTGAAGAAGATATTTCCTGGTAGAGACCAGGTCGGATTTCTTGAGATTGCTGGGTTGA TTAGTCCTCACTTCCTCAAATGA
AA sequence Show only first row Show all	>Potri.001G297400.1 pacid=42787947 polypeptide=Potri.001G297400.1.p locus=Potri.001G297400 ID=Potri.001G297400.1.v4.1 annot-version=v4.1 MEISSRTCFPFLSTETVPLLKPPFHTSSPSLRILAARPVNLRMGRTVVTCATASTGNRAPSGIMKPKRVSPEMADFVGAPEVSRTQVLKLIWAHIKERNL QDPSNKKNIICDEKLKKIFPGRDQVGFLEIAGLISPHFLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.001G297400 [exp]	0	1
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Potri.001G301100 [exp]	2.00	0.9803	SEP1.1
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Potri.006G246500 [exp]	3.46	0.9710
AT5G02120		PDE335, OHP	PIGMENT DEFECTIVE 335, one hel...		Potri.006G088200 [exp]	6.00	0.9630
AT5G65220			Ribosomal L29 family protein ...		Potri.007G093700 [exp]	7.21	0.9778
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Potri.016G072100 [exp]	11.31	0.9697	Pt-BAS1.2,PtrcPrx2-cysA
AT4G34620		SSR16	small subunit ribosomal protei...		Potri.013G128200 [exp]	11.61	0.9660
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.001G151300 [exp]	12.68	0.9683	Lil3_3,Pt-LIL3.1
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Potri.007G034300 [exp]	13.96	0.9687
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Potri.004G053400 [exp]	14.69	0.9684	Pt-CHLI1.1
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Potri.009G163200 [exp]	16.43	0.9654

Compare expression of checked genes

Potri.001G297400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.