Plant FIBer expression Database

Potri.001G297466 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G092300
[exp]
46 / 3e-06 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G297466.1 pacid=42792641 polypeptide=Potri.001G297466.1.p locus=Potri.001G297466 ID=Potri.001G297466.1.v4.1 annot-version=v4.1
ATGGTGCGTAGAAACGCTGTGATCTTTCTTTCTTTGATCTGCATTGTTATTGCTGGTGTTAGTGGTCAAGCACCAGCAACATCACCAACAGCAACACCAG
CACCACCTACGGCAACAACACCAACTACGTCTCCTCCACCAGCAACCTCCACTCCCCCACCAGTGTCAGCCCCACCTCCAGTCACCCAATCCCCACCTCC
AGCTACACCTCCTCCGGTCTCAGCCCCACCACCAGCCTCCCCTCCTCCAGCCACACCACCCCCAGCAACACCTCCTCCCGCCACACCTCCACCAGCAACA
CCTCCTCCCGCCACACCGCCACCTGCTACTCCACCACCAGCAACCCCTCCTCCAGCTGTTCCTCCACCAGCTCCCTTGGCTTCTCCGCCAGCTCTTGTTC
CAGCTCCAGCTCCCAGCAAGTCTAAGCTGAAGGCTCCAGCTCCATCTCCCCTGGCATCGAGTCCTCCAGCTCCACCAACCGGTGCTCCTGCTCCAAGTTT
GGGTGCCTCTTCTCCTGGACCCGTAGGAACCGATTTGAGTGGAGCGGAGAAGATGTGGTCATTGCAGAAGATGGTCGTGAGCTTGGCCCTCGGATCAACT
TTCTGGTTGCTGCTCTAG
AA sequence
>Potri.001G297466.1 pacid=42792641 polypeptide=Potri.001G297466.1.p locus=Potri.001G297466 ID=Potri.001G297466.1.v4.1 annot-version=v4.1
MVRRNAVIFLSLICIVIAGVSGQAPATSPTATPAPPTATTPTTSPPPATSTPPPVSAPPPVTQSPPPATPPPVSAPPPASPPPATPPPATPPPATPPPAT
PPPATPPPATPPPATPPPAVPPPAPLASPPALVPAPAPSKSKLKAPAPSPLASSPPAPPTGAPAPSLGASSPGPVGTDLSGAEKMWSLQKMVVSLALGST
FWLLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G297466
[exp]
0 1
Potri.009G092300
[exp]
1.41 0.9541 AGP9.1
AT4G18550 AtDSEL Arabidopsis thaliana DAD1-like... Potri.011G064400
[exp]
4.89 0.9278
AT3G22070 proline-rich family protein (.... Potri.007G120101
[exp]
5.09 0.9175
AT2G40070 unknown protein Potri.010G190300
[exp]
5.47 0.9195
AT1G69430 unknown protein Potri.006G155900
[exp]
5.74 0.9182
AT5G10840 Endomembrane protein 70 protei... Potri.006G264500
[exp]
6.32 0.9406
AT5G59305 unknown protein Potri.009G029000
[exp]
6.32 0.9146
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Potri.001G078900
[exp]
10.24 0.9224 KOR1.2
AT1G22760 PAB3 poly(A) binding protein 3 (.1) Potri.005G198500
[exp]
10.81 0.9032
AT1G36050 Endoplasmic reticulum vesicle ... Potri.005G168800
[exp]
11.31 0.9066

Potri.001G297466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.