Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34280 785 / 0 transducin family protein / WD-40 repeat family protein (.1) AT1G61210 64 / 4e-10 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 59 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 57 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 55 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G80710 50 / 8e-06 DRS1 DROUGHT SENSITIVE 1 (.1) AT3G49660 48 / 1e-05 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 47 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT4G11110 46 / 0.0001 SPA2 SPA1-related 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G092500 [exp] 1434 / 0 AT4G34280 775 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.007G051500 [exp] 840 / 0 AT4G34280 541 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.001G306500 [exp] 56 / 6e-08 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 57 / 7e-08 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 55 / 2e-07 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 54 / 3e-07 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 52 / 6e-07 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 49 / 6e-06 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G019833 [exp] 49 / 9e-06 AT4G18905 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026603 [exp] 1073 / 0 AT4G34280 777 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10013890 [exp] 1065 / 0 AT4G34280 758 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10002090 [exp] 58 / 1e-08 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 58 / 3e-08 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 58 / 3e-08 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003855 [exp] 56 / 5e-08 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 54 / 6e-07 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 54 / 9e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10003487 [exp] 50 / 3e-06 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 49 / 8e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G297600.2 pacid=42792312 polypeptide=Potri.001G297600.2.p locus=Potri.001G297600 ID=Potri.001G297600.2.v4.1 annot-version=v4.1 ATGGCCACTGATATCCCATCCTTTAATATCTCAACCCTGGAACAAATGTACATTGATTCTTGCAAGAGGCATGGTGTCCTACCTAATACAGAAATTTTAT CTGGTTTCCTTAAGGCTGAGGTTAAAAAGTCCTGCAATGAGATATGTAGCTTGGAGATCATCTTGGACCATCTTGAAGATATTGATGTTCCTCCGCTTCT TGATGTGTGTGCAACCATTGAAACTTCTGAGATTGAAGTGGTTGACATACGTAACGGACCGAATTGTACTTTGCATGTAGAATATGCTTTATCTTTGATG CGTGCTTTCAATCAAAAGCTTCAAGTAGTTGATCTTCAGGATTTGCCATTTGGAAAGGACTTCTTGCGGGAGCTTTCTCAGAAAGGTTTAGCTTGCCAAA TTTTGAATTTGAGGTCTTCTCATTTCCGGAATCTGAACATGGCAGGGAAATTCATGCAAATACATACCCTCAACCTTGATTTTAGTACTTCACTGACAAG CTTCCAGGAGGATTGTTTTACTTGCATGCCCATTCTAACTTGCCTCTCAATGTGCGAGACAAGAGTTGCAAATCTCTGGACAACTATTGCAGCACTTTCT AAACTCTCTTCTTTGGTAGAACTTCGGTTTCAGAAGTGGATATGCTGCAATGATTCTGCCTCTCCTTCAGCATCTTCAGGTGGAAATTTGGAGGATCAAC CTGATGTTAGAGAACTTTTGACTGATATTGATGAAGAATCATTTCTTAACCAAGGCACAGATGAGGGAACCGGGAATGTGTTTTCATTCAATGATATAGC TACAGGTCAGCAAGTTCAAAGTATGATGGAGGATTCATCAGATGACAATGAAGTTGATTTTTCAAGTTATTGGCAAGAATTTGATTATATGGATCTGTTG GCCAATTTTTCTTCTGGCTGGAACAGGCAGGTCAATCTGCAAAGTGAGCTTTCTTCTGGTACATCTAGGAATAAAAAAGAAGAGTCCCTGCATGGTTCCT TTGGGAGACATGTTGCAGATGTTCCTTCGAAGTATATCTCTCATCATGCTTCACCAATATGCTTCGAGAAACATTATAGAGAGTACATGATAGCTTCATT ACCCAATTTGAAAGTTTTGGATAACTTACCTGTCAGAAAGATTGACAGTGAAAGGGCTGCTGTTACATTTTCACAATATTTCGAGTACTTACCATACAAT CGGAAGCATAAAGAGAGTGTTGTCAGCATCTTGCACAAGCGTGAAATAAAAGATACCCGTTCTCATATGCTGTCAAAAAATCAAAAGCCTTCTTATTCTC ATGGAAACTCCCTATACTCTTATACCCGGTCTCTTTGTGCTGCAAAGTTGGGATCTTCTGCTTGGCCGTTGTTGCATTCACTTTCTGTATCAGGCTGTGA TTTAGGTGATGGAAGTAGGAGTTTCCGGCCCAGACAGTTTGAGTACCATCCATCTCTTTCTAGCCTAATGGTGTTTGGAACCTTGGATGGTGAAGTTGTT GTGGTGAACCATGAGAATGAGAAAGTAGTTAGGTACGTTTCATCACTTGGTGCCATGAATAGTGTGTTGGGACTCTGCTGGCTCAAGAAATATCCATCTA AGTTCATAGCAGGTTCAGATAGTGGTTTGCTAAAATTGTATGACATAGAGCACATGCCCCCAACAGTTACGGGCATGTATTCAGCTGCCGGTTCAATCAC CTTTGATGACTTTGACCAATTGACATCTGTTCATGTTAACTCCACCGACGAACTATTTCTGGCAAGCGGATACTCAAAAAATGTTGCTTTGTATGACATC AACAGTGGAAGGCGCATACAGGTGTTCACTGATGTGCACAGAGAGCACATCAATGTTGTCAAGTTCTCAAACCATTCCCCATCAGTTTTTGCAACTTCTT CATTTGATCAGGATGTCAAACTATGGGACTTGAGACAGAAACCAATACAGCCTTGCTATACTACTTCAGTCTCTAGAGGAAATGTGATGGTGTGCTTTTC TCCAGATGATCAATATCTTCTTGCATCTGCTGTTGATAATGAGGTTCGACAACTTTTGGCTGTTGATGGGAGGCTTCACTTGAGTTTTGACATAGCACCT ACGGGAAGTTCACAGAATTACACCCGTTCCTACTACATGAATGGAAGGGATTATATTATAAGTGGGAGTTGTGATGAACATGTGGTCCGTGTTTGCTGTG CTCAAACTGGAAGGCGTTTCAGAGACATATCCTTGGAGGGGAAAGGCCTAGGGAATTCAATGTATGTGCAATCTTTGAGGGGAGATCCTTTTAGGGATTT CAACATGAGTATATTGGCAGCCTATATGCGTCCCAACTCGAGGTATGAAATTGTGAAGGTCAATTTGCTAGCTTCCTGTGGGAATGCCAAGGGATACTCT AAAAGCCGGGATTCCTGCCCATCCACTAGCATGGGAGGTTGA
AA sequence Show only first row Show all	>Potri.001G297600.2 pacid=42792312 polypeptide=Potri.001G297600.2.p locus=Potri.001G297600 ID=Potri.001G297600.2.v4.1 annot-version=v4.1 MATDIPSFNISTLEQMYIDSCKRHGVLPNTEILSGFLKAEVKKSCNEICSLEIILDHLEDIDVPPLLDVCATIETSEIEVVDIRNGPNCTLHVEYALSLM RAFNQKLQVVDLQDLPFGKDFLRELSQKGLACQILNLRSSHFRNLNMAGKFMQIHTLNLDFSTSLTSFQEDCFTCMPILTCLSMCETRVANLWTTIAALS KLSSLVELRFQKWICCNDSASPSASSGGNLEDQPDVRELLTDIDEESFLNQGTDEGTGNVFSFNDIATGQQVQSMMEDSSDDNEVDFSSYWQEFDYMDLL ANFSSGWNRQVNLQSELSSGTSRNKKEESLHGSFGRHVADVPSKYISHHASPICFEKHYREYMIASLPNLKVLDNLPVRKIDSERAAVTFSQYFEYLPYN RKHKESVVSILHKREIKDTRSHMLSKNQKPSYSHGNSLYSYTRSLCAAKLGSSAWPLLHSLSVSGCDLGDGSRSFRPRQFEYHPSLSSLMVFGTLDGEVV VVNHENEKVVRYVSSLGAMNSVLGLCWLKKYPSKFIAGSDSGLLKLYDIEHMPPTVTGMYSAAGSITFDDFDQLTSVHVNSTDELFLASGYSKNVALYDI NSGRRIQVFTDVHREHINVVKFSNHSPSVFATSSFDQDVKLWDLRQKPIQPCYTTSVSRGNVMVCFSPDDQYLLASAVDNEVRQLLAVDGRLHLSFDIAP TGSSQNYTRSYYMNGRDYIISGSCDEHVVRVCCAQTGRRFRDISLEGKGLGNSMYVQSLRGDPFRDFNMSILAAYMRPNSRYEIVKVNLLASCGNAKGYS KSRDSCPSTSMGG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34280			transducin family protein / WD...		Potri.001G297600 [exp]	0	1
AT1G19485			Transducin/WD40 repeat-like su...		Potri.008G200900 [exp]	2.00	0.8115
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Potri.004G087400 [exp]	11.48	0.7759
AT3G55080			SET domain-containing protein ...		Potri.008G047400 [exp]	14.07	0.7517
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Potri.001G359900 [exp]	16.73	0.7808
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.018G033300 [exp]	21.93	0.7431
AT3G48470		EMB2423	embryo defective 2423 (.1)		Potri.015G090700 [exp]	22.47	0.7699
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	23.81	0.7783
AT1G01760			adenosine deaminases;RNA bindi...		Potri.014G081400 [exp]	32.83	0.6903
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	34.19	0.7568
AT5G07980			dentin sialophosphoprotein-rel...		Potri.012G066600 [exp]	35.49	0.7463

Compare expression of checked genes

Potri.001G297600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.