Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56510 212 / 1e-60 APUM12 pumilio 12 (.1) AT1G22240 194 / 6e-55 APUM8 pumilio 8 (.1) AT1G35730 193 / 6e-54 APUM9 pumilio 9 (.1) AT1G78160 191 / 2e-52 APUM7 pumilio 7 (.1) AT4G08840 188 / 3e-52 APUM11 pumilio 11 (.1) AT1G35750 184 / 5e-51 APUM10 pumilio 10 (.1) AT4G25880 154 / 4e-39 APUM6 pumilio 6 (.1.2.3) AT3G20250 152 / 2e-38 APUM5 pumilio 5 (.1) AT2G29140 150 / 6e-38 APUM3 pumilio 3 (.1) AT2G29190 147 / 7e-37 APUM2 pumilio 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G120900 [exp] 249 / 3e-75 AT5G56510 278 / 2e-86 pumilio 12 (.1) Potri.014G020300 [exp] 243 / 7e-73 AT5G56510 260 / 1e-79 pumilio 12 (.1) Potri.003G222300 [exp] 232 / 7e-67 AT5G56510 497 / 4e-168 pumilio 12 (.1) Potri.001G002600 [exp] 231 / 2e-66 AT5G56510 525 / 3e-179 pumilio 12 (.1) Potri.002G095400 [exp] 192 / 3e-52 AT1G78160 473 / 8e-158 pumilio 7 (.1) Potri.010G225600 [exp] 153 / 6e-39 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G058300 [exp] 151 / 3e-38 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.009G034900 [exp] 150 / 7e-38 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.010G201100 [exp] 150 / 7e-38 AT2G29200 923 / 0.0 pumilio 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024793 [exp] 254 / 1e-76 AT5G56510 283 / 1e-87 pumilio 12 (.1) Lus10018710 [exp] 253 / 2e-76 AT5G56510 281 / 3e-87 pumilio 12 (.1) Lus10041139 [exp] 199 / 9e-56 AT1G78160 437 / 4e-146 pumilio 7 (.1) Lus10036469 [exp] 196 / 2e-55 AT1G78160 441 / 5e-149 pumilio 7 (.1) Lus10037976 [exp] 153 / 1e-38 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10016513 [exp] 152 / 2e-38 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10038706 [exp] 149 / 3e-37 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10001567 [exp] 149 / 3e-37 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10000516 [exp] 142 / 3e-37 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10040782 [exp] 147 / 7e-37 AT2G29190 1095 / 0.0 pumilio 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat
Representative CDS sequence Show only first row Show all	>Potri.001G298000.1 pacid=42787944 polypeptide=Potri.001G298000.1.p locus=Potri.001G298000 ID=Potri.001G298000.1.v4.1 annot-version=v4.1 ATGAAACTTGATTATTCTTACCCCTTTGAAGATCCAATTCTAGAAAGTTACTTTGCTAGAATGAATCTTTCTACAACTGGTAGATTTTCTCATTCTTCTA ATGAACAACAACGATCTTTGAACACGATGAGGAGTGATGATCAGTACTCACTTGCTGCTGGTCACCCATCATACCAGAATAGCTCCCAAAATGGGACCAC ATATATGGAGCAATATCCTTATTTTTCCAACATTAGAAACAATAATGGAGGCTGCGGCTATGATCAGAATGTCCGAGATCAAGACTACCATGATAGGTTT GCGCTGCATTCTTTCCCCAGCACCTCCCAAAATAGTACCGGACATACGGTGCATCCTTCTTTTTCCAACATCGGAAACAATAATGGCGGCCTCGGCTATA CTCAAAATATCCAAGACCAAGACTGCCGAGATAGGTTTGCACTGCATTCTTTTTCCAACTTCGGAAACAATAATGGCGGCCTCGGCTATAATCAAAATAT CCAAGACCAAGACTGCCGAGATAGGTTTGCACTGCATTCTTTTTCCAACTTCGGAAACAATAATGGCGGCCTCGTCTATAATCAAAATATCCAAGACCAA GACTGCCGAGATAGGTTTGCACTGCATTCTTTTTCCAACTTCGGAAATAAGCATGGGAGCACTTCGCGCGCGCGTATACGTAGTCAGTCTTATGATGCGC TTGATCAATATGGATTATGTCTTGGTAGAATACTCGATGCTGATAGCACAATACTTGATACTGGCTCTCAATTTAGAAGGGTAAGATCGTTAGAATCCTC AACGTCAGATACTCTGAGGGTTTCTTCTTTGCCTAATTCCCCAGTTTTTCAATCAGATCACCCATCACTATATAAACTGAAAGGCAGAGTGGCTGTGGCA GCAAGAAGTCAAATTCTGTATCGGGTCTTGCAGGGCGTCCTTGATGAGAGGAAGCCAGATCTAATTGAGATGATTTTCTTGGAAGTGAAAGATTATGTAC ATGACTTAATGGAAGATCAGTTTGGTAATCATGTTATTCAGAAGCTTTTTGAAGTATGCAGTGAAGCCCAAATGACTCAACTTATTCTCTCTTTGATCCA TAACCAAAGGAGGCTGCTTGGGTTATGCTTTCATCTAGTGGGAACCCGTGCGATGCAAAAGATGATAGAGCACATCAAAACGCCTAAGCAAAGATTGTTG CTTACACAAGTTTTGATTCGGAGGACAGTCATCTTATCCCAGAACCAAAATGGTTATCATGTAATTCAAAAATGCTTGGAACATTTCCCATTTGATGATA TAAAGCCCCTCATCAAAGAAATAGCAGAAAGTTTTCTTGACATTGCAATGGATAAAAGCGGATGTTGTGTATTGAACCGAGCTTTGGATTGTGCACAAGG GGAGCTTAAGCATCTTCTTTTGCTTGAAACAATAGCTAATGCAATGTTACTATCGGAAAGTCCTTATGGGAATTATGTCGTGCAACATGTACTCGACGAA CGCATACAGCATGCAACAATCGGGATACTAGAGAAGCTAAAAGGATATTTTGTGTCTCTCTCCATGAACAAGTTTGGAAGCAATGTCGTGGAAAAATGTT TGATATGGAGCGGGGAGGAGAATGCTTCAATGATTATCGAGGAGTTTATGCACAGCCCTTACTTCGTGAACATCTGCCGTAATAACTTCGGGAACTATGT TGTTCAAAAGGCACTGGAAGTATCAAAGGGAGGCATTCGCAATGCTCTTGTCAGTCGCATAAATGATTCCTATCCAGATCTGTACAGTGATATTAATGCA AAAAGGGTGGTCAGGAAAGCTCGAGATATCAGGTTCCGGATATAA
AA sequence Show only first row Show all	>Potri.001G298000.1 pacid=42787944 polypeptide=Potri.001G298000.1.p locus=Potri.001G298000 ID=Potri.001G298000.1.v4.1 annot-version=v4.1 MKLDYSYPFEDPILESYFARMNLSTTGRFSHSSNEQQRSLNTMRSDDQYSLAAGHPSYQNSSQNGTTYMEQYPYFSNIRNNNGGCGYDQNVRDQDYHDRF ALHSFPSTSQNSTGHTVHPSFSNIGNNNGGLGYTQNIQDQDCRDRFALHSFSNFGNNNGGLGYNQNIQDQDCRDRFALHSFSNFGNNNGGLVYNQNIQDQ DCRDRFALHSFSNFGNKHGSTSRARIRSQSYDALDQYGLCLGRILDADSTILDTGSQFRRVRSLESSTSDTLRVSSLPNSPVFQSDHPSLYKLKGRVAVA ARSQILYRVLQGVLDERKPDLIEMIFLEVKDYVHDLMEDQFGNHVIQKLFEVCSEAQMTQLILSLIHNQRRLLGLCFHLVGTRAMQKMIEHIKTPKQRLL LTQVLIRRTVILSQNQNGYHVIQKCLEHFPFDDIKPLIKEIAESFLDIAMDKSGCCVLNRALDCAQGELKHLLLLETIANAMLLSESPYGNYVVQHVLDE RIQHATIGILEKLKGYFVSLSMNKFGSNVVEKCLIWSGEENASMIIEEFMHSPYFVNICRNNFGNYVVQKALEVSKGGIRNALVSRINDSYPDLYSDINA KRVVRKARDIRFRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56510		APUM12	pumilio 12 (.1)		Potri.001G298000 [exp]	0	1
					Potri.001G169351 [exp]	4.24	1.0000
					Potri.001G196900 [exp]	6.00	1.0000
AT3G28007		SWEET4, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G344300 [exp]	7.34	1.0000
					Potri.002G092751 [exp]	9.00	1.0000
					Potri.003G015466 [exp]	9.48	1.0000
					Potri.003G072050 [exp]	9.94	1.0000
AT5G18990			Pectin lyase-like superfamily ...		Potri.004G033700 [exp]	10.19	1.0000
AT1G30190			unknown protein		Potri.004G065300 [exp]	11.22	1.0000
AT1G16730		UP6	unknown protein 6 (.1)		Potri.007G003700 [exp]	13.74	1.0000
AT1G69180	YABBY	CRC	CRABS CLAW, Plant-specific tra...		Potri.008G097800 [exp]	15.00	1.0000	CRC.1

Compare expression of checked genes

Potri.001G298000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.