Plant FIBer expression Database

Potri.001G298200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G14910 418 / 1e-145 unknown protein
AT5G14970 193 / 5e-58 unknown protein
AT1G63610 92 / 1e-20 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G092800
[exp]
595 / 0 AT2G14910 421 / 9e-147 unknown protein
Potri.005G250000
[exp]
93 / 8e-21 AT1G63610 441 / 7e-156 unknown protein
Potri.002G011000
[exp]
86 / 1e-18 AT1G63610 431 / 3e-152 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026601
[exp]
456 / 3e-160 AT2G14910 396 / 9e-137 unknown protein
Lus10013888
[exp]
432 / 8e-150 AT2G14910 380 / 8e-130 unknown protein
Lus10014506
[exp]
151 / 1e-41 AT5G14970 329 / 5e-111 unknown protein
Lus10032180
[exp]
150 / 1e-41 AT5G14970 327 / 4e-111 unknown protein
Lus10013233
[exp]
87 / 8e-19 AT1G63610 389 / 1e-135 unknown protein
Lus10030753
[exp]
86 / 2e-18 AT1G63610 397 / 6e-139 unknown protein
Lus10016008
[exp]
83 / 3e-17 AT1G63610 409 / 1e-143 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05542 DUF760 Protein of unknown function (DUF760)
Representative CDS sequence
>Potri.001G298200.1 pacid=42789873 polypeptide=Potri.001G298200.1.p locus=Potri.001G298200 ID=Potri.001G298200.1.v4.1 annot-version=v4.1
ATGGCAACCTTTCTCTCCTCATCTTCTCTTCCTCTCCCTCTGCTCCTCTCCTCTAATCACTGTCTCCTTCAAACGCCGCCGTCTCTTTCTCTCTCATTCC
CATTTTCTTATCCTCTTCGCGCCACTATTACCGCAAATTCTAGACAAATCAAAACCCTAATTCTTGCTTCGTCGAATTCAGATTCTTCCTTCGACGGATT
CGGTTTTAATCGAGAGCCTTGTTCTACCGATAAGAAATCACTTCTTTCAGAATTGATACAAGAGATAGAGCCATTAGATGTGAGCCTTATCCAAAAAGAT
GTTCCACCTGCTACTTTGGATGCTATGAAGAGGACCATCTCGGGCATGTTGGGCTTACTTCCATCAGACCGATTTCAAGTTTTTATTGAGGCTTGGTGGG
AATCTCTCTCAAAGTTATTGGTCTCTTCAATGATGACAGGGTATACACTACGAAATGCTGAGTATAGGCTTTGCCTTGAAAGAAACCTTGATATACACGA
AGAAGATTCTGAAAAGCAAGCGCAGGGAAATTCAAAAAACAATCTTCAAGGGTTAGTGCTAGAGAGTGAAGAAACAAATCAAAGTCTTGGAAAAGATACT
GAATTTGAAAAAATTGCAGAAGACCTATCTGATGACATCAATATCCAAGGCCTTGGTGAAATATCCCTTGAAGCTCAGCAATATATTCTTCATTTACAAT
CTCATTTATCTTCTGTGAAAAAGGAACTACATGAAGTTAGGATGAAAAGTGCTGCTCTTCAAATGCATCAATTTGTCGGCGAAGAAAAGAATGATTTACT
GGACTACTTAAGGTCACTACAACCAGAGAAGGTTGCCGAGTTATCCGAACCAACATTCCCTGAATTAAAAGAAACGATCCATTCTGTAGTCCACGGTCTC
CTTGCAACCCTTTCTCCTAAGATGCATTCTAAGACTCCTCCACAATCAGAGAACACATCACCTGGATCGCTAAATATTGGAGTTGATTGTGCTGAACTTG
TTGAGAACACTTCACTTCATTTCCAGCCCCTCATTTCATTGACAAGGGACTATCTGGCACGACTACTTTTCTGGTGTATGCTTTTGGGGCACTACCTGCG
AGGCCTTGAGTACCGAATGGAGCTGATGGAACTTCTATCCTTGACAAGCCATGAAGAAAATGATTCCTGTGAAGACAGGCAAGTTGCTTGA
AA sequence
>Potri.001G298200.1 pacid=42789873 polypeptide=Potri.001G298200.1.p locus=Potri.001G298200 ID=Potri.001G298200.1.v4.1 annot-version=v4.1
MATFLSSSSLPLPLLLSSNHCLLQTPPSLSLSFPFSYPLRATITANSRQIKTLILASSNSDSSFDGFGFNREPCSTDKKSLLSELIQEIEPLDVSLIQKD
VPPATLDAMKRTISGMLGLLPSDRFQVFIEAWWESLSKLLVSSMMTGYTLRNAEYRLCLERNLDIHEEDSEKQAQGNSKNNLQGLVLESEETNQSLGKDT
EFEKIAEDLSDDINIQGLGEISLEAQQYILHLQSHLSSVKKELHEVRMKSAALQMHQFVGEEKNDLLDYLRSLQPEKVAELSEPTFPELKETIHSVVHGL
LATLSPKMHSKTPPQSENTSPGSLNIGVDCAELVENTSLHFQPLISLTRDYLARLLFWCMLLGHYLRGLEYRMELMELLSLTSHEENDSCEDRQVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G14910 unknown protein Potri.001G298200
[exp]
0 1
AT2G43540 unknown protein Potri.007G134400
[exp]
1.00 0.9119
AT3G22530 unknown protein Potri.010G086400
[exp]
1.41 0.8976
AT2G15695 Protein of unknown function DU... Potri.009G103500
[exp]
1.73 0.8845
AT5G22040 unknown protein Potri.008G001700
[exp]
5.47 0.8649
AT1G21680 DPP6 N-terminal domain-like pr... Potri.002G079900
[exp]
5.91 0.8791
AT1G15340 MBD10 methyl-CPG-binding domain 10 (... Potri.006G067700
[exp]
9.48 0.8811
AT5G54930 AT hook motif-containing prote... Potri.011G138700
[exp]
10.19 0.8768
AT1G56560 A/N-InvA alkaline/neutral invertase A, ... Potri.005G010800
[exp]
10.81 0.8469
AT5G39410 Saccharopine dehydrogenase (.... Potri.004G126100
[exp]
11.83 0.8820
AT1G07310 Calcium-dependent lipid-bindin... Potri.009G043300
[exp]
12.36 0.8609

Potri.001G298200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.