Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19510 294 / 4e-87 HD HAT3.1 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) AT4G29940 181 / 2e-47 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT5G09790 49 / 9e-06 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT3G01460 49 / 2e-05 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G77250 45 / 0.0003 RING/FYVE/PHD-type zinc finger family protein (.1) AT5G24330 44 / 0.0004 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G093000 [exp] 1160 / 0 AT3G19510 291 / 3e-86 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Potri.018G142400 [exp] 176 / 8e-46 AT4G29940 461 / 4e-152 pathogenesis related homeodomain protein A (.1.2) Potri.006G075500 [exp] 175 / 2e-45 AT4G29940 466 / 6e-154 pathogenesis related homeodomain protein A (.1.2) Potri.015G009632 [exp] 56 / 6e-08 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.012G018300 [exp] 56 / 6e-08 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.017G072460 [exp] 49 / 2e-05 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.002G076900 [exp] 47 / 5e-05 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.005G183700 [exp] 45 / 0.0002 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.008G152600 [exp] 44 / 0.0006 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018741 [exp] 311 / 7e-93 AT3G19510 304 / 4e-92 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10024826 [exp] 221 / 1e-60 AT3G19510 224 / 1e-62 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1) Lus10020011 [exp] 176 / 5e-46 AT4G29940 429 / 7e-141 pathogenesis related homeodomain protein A (.1.2) Lus10015536 [exp] 174 / 4e-45 AT4G29940 440 / 4e-144 pathogenesis related homeodomain protein A (.1.2) Lus10030625 [exp] 52 / 2e-06 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 50 / 8e-06 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10008796 [exp] 46 / 0.0002 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10003183 [exp] 43 / 0.0005 AT5G25220 381 / 2e-133 KNOTTED1-like homeobox gene 3 (.1.2) Lus10025940 [exp] 44 / 0.0008 AT3G61150 504 / 1e-168 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.001G298400.3 pacid=42792839 polypeptide=Potri.001G298400.3.p locus=Potri.001G298400 ID=Potri.001G298400.3.v4.1 annot-version=v4.1 ATGTCCGAGGCTGAGCACATGGGTGTTTCTCCATCAAAAGTTTCTCATACTAAAAGTTATTCATGCCCTGCACAAACTACACTGGAAAATACGCATGAAC CCAGTGCTGAATACAAGTTTGGTGGATATCCGGAAGAGAGACATAAGCTTGAGTGTGAAATCATACAAACTGAAGCTGGAGATAACAGGGCTGCAGTTCT CCAATCTTGTTCTGGTGAAGTTGTGCAACCATCTACTGACGATTTAACAAAAAGTCCTCTTATTGATTTGGACCCACCTCCTGACGATGCAAGGAGTGCT CTGTTTGATAATAGTCCAAGACCTATATCAACCGCTATGGATCAGAAACTTGAGCCAGGTGCTACAAGTGTGAATACTGCTTGTGTGCATAGTGAATCAT CAAAAGCAATTGACTCTAGTATTCTACTGGATGAACCTAGGAATAGCAACACAGAATTGTCAAGCTGCATTGCAAATGAAACCTCACAAGCATCACTTGA AGGTCTAGCCAATGATTCTCGTGCTGAAGATGCAGGACTGTCACTTGTAGAGGCAAGCAATAGTGACCTGATTGATGAAAGTTCATACTCTCAACAAACT ACATCTGGACAGACACGTGAGTTTCATTCTGACAGAGCTTGTTGTAAACCATTGGAAGAAAGACAGAAGCCCGGCTCTGAACTTGCAGAAAATGAATCAA TGGAAATTGGCATTGGATTACCCAGTGGTATTGCTATTGAGAATTTGGAGCCGCTTACTGAACTTGTGACCAAGAGTTGTCCTATCAAACATATAGGCTT GCCTCCTGGTGATGACATCAGCATTCCTGCAAATGAACAAATAAGACCTACTCATGATAAGGAGTCCAAATACCCTGATTGTGAACATTTGGAAAAGCTA TCTGGAATTGTGATTGGTATTACTAGTCAAGGTGTACCCAGTGTTAAGAGAACTTCAAAATTGTCAGGGAAGAAATATACAAGTTCTTCGAGAAAAAGTG ATAGAGTTCTCCGGTCAAATTCACAAGAGAAACCTAAAGCTCCCGAGTCGAGTAATAATTCTACTAATGTTAATTCCACTGGTGAGGAAAAAGGGAAAAG GAGGAAAAAGAGAAGAGGGAAAAGTATAGTGGCTGATGAATATTCCAGAATCAGGGCACGTCTTAGGTACTTGTTGAATCGGATGAGCTATGAGCAAAGC TTGATCACTGCTTATTCCGGGGAAGGCTGGAAAGGACTTAGCCTAGAAAAGTTAAAACCTGAGAAGGAGTTGCAACGGGCCACATCTGAAATCATCAGAC GCAAAGTGAAAATAAGGGATTTATTTCAACATATTGATTCACTATGCGGTGAAGGAAGGTTCCCAGCATCTTTGTTTGATTCTGAAGGACAAATTGACAG TGAGGATATATTCTGTGCAAAATGTGGATCCAAAGATTTGACTGCTGATAATGATATTATACTATGTGATGGTGCTTGCGACCGAGGGTTTCATCAATTC TGTTTGGTACCACCATTGTTAAGAGAAGACATTCCTCCTGGTGATGAGGGCTGGTTATGCCCTGGATGTGATTGCAAAGTTGACTGCATTGACTTGCTTA ATGACTCTCAAGGAACAAATATATCTATCAGTGACAGATGGGATAATGTTTTCCCCGAGGCAGCTGCAGTAGCATCTGGACAAAAACTCGACTACAACTT TGGATTGTCTTCTGATGATTCTGATGATAATGATTATGATCCTGATGGTCCAGATATTGACGAGAAGAGTCAGGAGGAATCAAGCTCTGACGAATCTGAC TTCAGTTCTGCGTCTGATGAATTTGAGGCTCCACCTGATGATAAACAGTACTTGGGGCTCCCTTCTGATGATTCAGAGGATGATGACTATGATCCTGATG CTCCAGTTCTCGAGGAGAAGCTGAAGCAGGAAAGTTCCAGTTCTGATTTTACTTCGGACTCTGAGGATCTTGATGCCACTCTTAATGGTGATGGGTTGTC TTTAGGAGATGAATACCACATGCCTATTGAACCTCATGAAGATTCTAATGGGCGAAGATCGAGATTTGGTGGAAAGAAGAATCATTCTTTAAACAGCAAG CTTTTATCCATGCTAGAACCAGATTCTCACCAAGAAAAGTCTGCACCTGTTTCTGGAAAAAGAAATATTGAAAGATTGGACTACAAGAAGCTCTATGATG AAACATATGGAAACATTTCTACTTCAAGTGATGATGATTACACTGATACTGTTGCACCAAGGAAGAGGAGGAAAAACACTGGAGATGTTGCTATGGGGAT AGCAAATGGAGATGCTTCTGTTACTGAGAATGGATTGAATAGCAAGAATATGAATCAGGAATTAAAGAAGAATGAACATACTTCTGGGAGAACTCACCAA AACTCGAGCTTTCAAGATACAAATGTTTCCCCAGCAAAAACACATGTTGGCGAATCTCTCTCTGGTTCTAGCAGTAAAAGAGTTAGGCCCTCTGCTTATA AAAAACTTGGAGAAGCTGTAACTCAGAAACTGTACAGTTTCTTCAAGGAAAATCGGTATCCTGACCAAGCTGCAAAGGCAAGTTTGGCAGAAGAGCTAGG AATTACTTTTGAGCAGGTTAACAAGTGGTTCATGAATGCTCGTTGGAGCTTCAACCATTCATCACCTGAAGGTACAAGTAAAGCTGAAAGTGCTTCAGGA AAGGGTAGCTGTGATGGGCATGTGAGGGATAGTGAATCGAAGAACCAAAAGAGCAATAAACAAAAAACTAGTACCCCAAAATCTAGGAGATAG
AA sequence Show only first row Show all	>Potri.001G298400.3 pacid=42792839 polypeptide=Potri.001G298400.3.p locus=Potri.001G298400 ID=Potri.001G298400.3.v4.1 annot-version=v4.1 MSEAEHMGVSPSKVSHTKSYSCPAQTTLENTHEPSAEYKFGGYPEERHKLECEIIQTEAGDNRAAVLQSCSGEVVQPSTDDLTKSPLIDLDPPPDDARSA LFDNSPRPISTAMDQKLEPGATSVNTACVHSESSKAIDSSILLDEPRNSNTELSSCIANETSQASLEGLANDSRAEDAGLSLVEASNSDLIDESSYSQQT TSGQTREFHSDRACCKPLEERQKPGSELAENESMEIGIGLPSGIAIENLEPLTELVTKSCPIKHIGLPPGDDISIPANEQIRPTHDKESKYPDCEHLEKL SGIVIGITSQGVPSVKRTSKLSGKKYTSSSRKSDRVLRSNSQEKPKAPESSNNSTNVNSTGEEKGKRRKKRRGKSIVADEYSRIRARLRYLLNRMSYEQS LITAYSGEGWKGLSLEKLKPEKELQRATSEIIRRKVKIRDLFQHIDSLCGEGRFPASLFDSEGQIDSEDIFCAKCGSKDLTADNDIILCDGACDRGFHQF CLVPPLLREDIPPGDEGWLCPGCDCKVDCIDLLNDSQGTNISISDRWDNVFPEAAAVASGQKLDYNFGLSSDDSDDNDYDPDGPDIDEKSQEESSSDESD FSSASDEFEAPPDDKQYLGLPSDDSEDDDYDPDAPVLEEKLKQESSSSDFTSDSEDLDATLNGDGLSLGDEYHMPIEPHEDSNGRRSRFGGKKNHSLNSK LLSMLEPDSHQEKSAPVSGKRNIERLDYKKLYDETYGNISTSSDDDYTDTVAPRKRRKNTGDVAMGIANGDASVTENGLNSKNMNQELKKNEHTSGRTHQ NSSFQDTNVSPAKTHVGESLSGSSSKRVRPSAYKKLGEAVTQKLYSFFKENRYPDQAAKASLAEELGITFEQVNKWFMNARWSFNHSSPEGTSKAESASG KGSCDGHVRDSESKNQKSNKQKTSTPKSRR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.001G298400 [exp]	0	1
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	4.58	0.8025
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	5.29	0.7930
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Potri.010G190100 [exp]	16.12	0.7247
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.002G159300 [exp]	16.49	0.7042
AT3G62310			RNA helicase family protein (....		Potri.002G192500 [exp]	19.89	0.7327
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G205800 [exp]	22.02	0.7467
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.014G135800 [exp]	22.91	0.7011	PP1.6
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	23.04	0.7571
AT4G23000			Calcineurin-like metallo-phosp...		Potri.014G034400 [exp]	24.53	0.7306
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Potri.016G081000 [exp]	25.49	0.7096

Compare expression of checked genes

Potri.001G298400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.