Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34260 993 / 0 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G093500 [exp] 1337 / 0 AT4G34260 1030 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G299000 [exp] 1203 / 0 AT4G34260 1104 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093900 [exp] 1191 / 0 AT4G34260 1133 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093600 [exp] 82 / 7e-19 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026594 [exp] 1112 / 0 AT4G34260 1100 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10020979 [exp] 1079 / 0 AT4G34260 995 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10029689 [exp] 1040 / 0 AT4G34260 1039 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013884 [exp] 992 / 0 AT4G34260 1023 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10026595 [exp] 566 / 0 AT4G34260 570 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013883 [exp] 159 / 1e-43 AT4G34260 146 / 1e-39 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF14498 [poplar] [flax] Glyco_hyd_65N_2 Glycosyl hydrolase family 65, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G298900.1 pacid=42791309 polypeptide=Potri.001G298900.1.p locus=Potri.001G298900 ID=Potri.001G298900.1.v4.1 annot-version=v4.1 ATGGAAAGTGGAGAGTGGGTTTTTGTAACACGACCAACCGAGAAAGACTTGTGGAACCCAACTTCAACTGAGTTGGAGGATTCCAGACCGTTAAAAGTCA CTTTTAGCGGGCCGGCCAAGTACTGGACTGATGGAATTCCGATCGGTAATGGCCGTCTTGGTGCCATGGTGTGGGGTGGTGTTTCATCAGAACTTATCCA ACTGAATGAGGACACATTATGGACAGGGACTCCAACTGATTTTACTGACCCTGCTATACCACAAGCATTATCAGAGGTTAGAAATCTTGTTGACAGTGGT AAATTTTCAGAAGCAACTAAAGCAGCAGCAAGGATGTTTGGAAAATATACCAATGTTTACAAACTACTTGGTGATATCAAGCTAGAATTTAATGGTTCCA CATATGCCGAAGGAACATATTATAGAGAGCTAGACTTGGATACTGCAACAGGAAGAGTAAAGTATACCGTGGATGATGTAGAATTCACAAGGGAACACTT TGCATCTAATCCAGATCAAGTGATTGTGACCAAGATTTCTGGAAGCAAAGCACAGTCTGTATCCTTTGCTGTATCTTTAGACAGCATATTAGAGCATCAA TGTTACCTAACAGATGAAAATCAACTTGTAATGGAAGGAATTTGCCCTAGAAAAAGGATGACAACAGAAGTGAAGGCAAATGATGATCCAAAGGGAATGA AGTTCACTGCTGTTCTTGATTTACAGATTAGTAATGGCGCACGTTTGGTACGTCTTCTGGATGACAACAAGTTGAAGGTTGTTGGAGCAGATTGGGCTGT GTTGCTGCTGGTGGCTTCATCTTCATTTGAAGGGCCATTCGTGGATCCTTCAGATTCAAAGAAAAATCCTACTTCTGACTCTCTTCAAGCAATGAATTCA ATAAAAAAGCTGTCATATTCTCAGCTTTATTCACGTCATTTAGATGACTTTCAGAATCTTTTTCACCGTGTTTCATTGCAGCTGGAGAAGAGCTCTGCTA TTGGAGATGGGGTTTCAGAGATCAAGAATCTTATGCCTTCAGTGATTGAAGATTTCGAAGGGAATAAAGATGTTGTGGTTCCAACAGTAGAGAGAATAAA GTCCTTTGAATCTGATGAAGATCCTTCCTTGGTGGAGCTTCTATTCCAGTTTGGTCGATATTTGCTTATTTCTTGTTCACGCCCCGGAACTCAGGTGGCT AATCTTCAAGGAATATGGAACAAGGATCTTTATCCAGCATGGGACTCTGCTCCAACCTTGAACATCAATCTTGAAATGAACTATTGGCCTTCCCTGCCTT GCAACCTCAGAGAGTGCCAGGAGCCCTTGTTTGATTTCATCAAATCTCTATCAATCAATGGAAGTAAAGTTGCACAAGTAAACTACATTACAAGTGGTTG GGTTGCGCATCACAGGTCTGACATATGGGAGAAAGCATCCGCAGATATGGGAAATCCTAAGTGGGCAATATGGCCAATGGCTGGGGCCTGGGTTTGTACA CACTTATGGGAGCACTACACTTATACACTGGACAAAGATTTTCTTATAAATACGGCATACCCTCTGTTGGAAGGATGTGCATCATTTTTGATGGACTGGT TGATTGAAGGGAATGATGGATATCTGGAAACCAACCCGTCAACATCTCCAGAACACATGTTTATTGCCCCAGATGGTAATTCTGCTTCTGTGAGCTACTC GTCAACCATGGATATGGCTATCATCAACGAAGTATTTTCTGCAATTGTTTCTGCTTCTGAGGTTTTAGGCAGAAGTGAGGATGCTCTTGTTCAGAAAGTG CTCAAGGCTCAACCAAGGCTTTATCCACCAAAAATTGCTCCAGATGGTTCTATCATGGAATGGGCACTCAATTTCAAGGATCCTGAGGTGAAGCATCGAC ATATTTCACATCTATTTGGGCTGTTTCCAGGGCACTCAATAACCTTGAAGAAAAATCCAGAACTCTGTAAAGCCGCAGAAAATACTCTCTACAAAAGAGG AGAGGATGGCCCAGGATGGTCGACTGTATGGAAAACTGCTGTATGGGCACGTCTACAGAACAGTGAGCACGCTTATACAATGGTTAAGCATTTGATTAGG TTGGTAGACCCGGCGGATCAGAAGATAGGTTTCGAAGGTGGACTATACAGCAACTTATTTGCAGCACACCCTCCTTTTCAAATCGATGCCAATTTGGGGT TCCCAGCCGCAGTTTCGGAAATGCTTGTCCAGAGTACGATGACGGATTTGTACTTGCTTCCTGCTCTTCCTCGAGATAAATGGGCAAAAGGGTGTGTGAA AGGATTGCAAGCACGTGGGGGGAATACAGTCAACATATGCTGGGACAAAGGAGATCTTCAAGAAGTTGGCCTGTGGTTGAAGAAGGATGGGAGTTGTTCT CTCCAAAGATTACATTATAGAGGAACTACAGTTACGACAAGCTTATCATCTGGGATAATTTACACATTTAATTCACAGTTGCAATGTATAAAGTCGTTCT CGCTTTCGGAAGTGGCCTTCCCTCGAGTTTAG
AA sequence Show only first row Show all	>Potri.001G298900.1 pacid=42791309 polypeptide=Potri.001G298900.1.p locus=Potri.001G298900 ID=Potri.001G298900.1.v4.1 annot-version=v4.1 MESGEWVFVTRPTEKDLWNPTSTELEDSRPLKVTFSGPAKYWTDGIPIGNGRLGAMVWGGVSSELIQLNEDTLWTGTPTDFTDPAIPQALSEVRNLVDSG KFSEATKAAARMFGKYTNVYKLLGDIKLEFNGSTYAEGTYYRELDLDTATGRVKYTVDDVEFTREHFASNPDQVIVTKISGSKAQSVSFAVSLDSILEHQ CYLTDENQLVMEGICPRKRMTTEVKANDDPKGMKFTAVLDLQISNGARLVRLLDDNKLKVVGADWAVLLLVASSSFEGPFVDPSDSKKNPTSDSLQAMNS IKKLSYSQLYSRHLDDFQNLFHRVSLQLEKSSAIGDGVSEIKNLMPSVIEDFEGNKDVVVPTVERIKSFESDEDPSLVELLFQFGRYLLISCSRPGTQVA NLQGIWNKDLYPAWDSAPTLNINLEMNYWPSLPCNLRECQEPLFDFIKSLSINGSKVAQVNYITSGWVAHHRSDIWEKASADMGNPKWAIWPMAGAWVCT HLWEHYTYTLDKDFLINTAYPLLEGCASFLMDWLIEGNDGYLETNPSTSPEHMFIAPDGNSASVSYSSTMDMAIINEVFSAIVSASEVLGRSEDALVQKV LKAQPRLYPPKIAPDGSIMEWALNFKDPEVKHRHISHLFGLFPGHSITLKKNPELCKAAENTLYKRGEDGPGWSTVWKTAVWARLQNSEHAYTMVKHLIR LVDPADQKIGFEGGLYSNLFAAHPPFQIDANLGFPAAVSEMLVQSTMTDLYLLPALPRDKWAKGCVKGLQARGGNTVNICWDKGDLQEVGLWLKKDGSCS LQRLHYRGTTVTTSLSSGIIYTFNSQLQCIKSFSLSEVAFPRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G298900 [exp]	0	1
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.003G130000 [exp]	5.47	0.8713
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Potri.003G039700 [exp]	6.32	0.8764
AT1G60460			unknown protein		Potri.010G041900 [exp]	6.55	0.8779
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Potri.006G154600 [exp]	6.70	0.8769	AKT1.1
AT5G19485			transferases;nucleotidyltransf...		Potri.009G066400 [exp]	7.48	0.8676
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.004G080200 [exp]	16.30	0.8357
AT1G21740			Protein of unknown function (D...		Potri.002G082000 [exp]	17.02	0.8396
AT4G31980			unknown protein		Potri.001G017900 [exp]	17.49	0.8388
					Potri.004G093250 [exp]	19.33	0.8571
AT1G22970			unknown protein		Potri.010G117100 [exp]	19.36	0.8746

Compare expression of checked genes

Potri.001G298900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.