Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34260 1103 / 0 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G093900 [exp] 1479 / 0 AT4G34260 1133 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093500 [exp] 1233 / 0 AT4G34260 1030 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G298900 [exp] 1203 / 0 AT4G34260 991 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093600 [exp] 50 / 9e-08 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026594 [exp] 1282 / 0 AT4G34260 1100 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10029689 [exp] 1170 / 0 AT4G34260 1039 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013884 [exp] 1124 / 0 AT4G34260 1023 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10020979 [exp] 1084 / 0 AT4G34260 995 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10026595 [exp] 627 / 0 AT4G34260 570 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013883 [exp] 191 / 1e-54 AT4G34260 146 / 1e-39 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF14498 [poplar] [flax] Glyco_hyd_65N_2 Glycosyl hydrolase family 65, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G299000.1 pacid=42789430 polypeptide=Potri.001G299000.1.p locus=Potri.001G299000 ID=Potri.001G299000.1.v4.1 annot-version=v4.1 ATGGAAGATAAGGAGTGGGTTCTGGTGCAGCGTTCTACAGAGAAGGATTGGTGGAATCCGAGTTTGATGGAGGATAACAATGGAGAAAGTTCTAAGCCAT TGAGGGTTACCTTTAGTGGGCCAGCTAAGCATTGGACGGACGCAATTCCGATTGGCAATGGCAGGCTTGGTGCCATGATTTGGGGTGGTGTTGCATTAGA AACTCTCCAACTTAATGAGGATACACTCTGGACTGGAATCCCAGGAGACTATACTAACCCTAATGCTCCAGCAGCCCTGTTAGAGGTCAGAAAACTTGTT GATAATGGCCAGTATGCTGAAGCTACAACTGCAGCAGAAAAACTTTCAGGAAATCAATCTGATGTTTACCAACTACTTGGCGATATCAAGCTGGAATTTG ATGATTCACATCTCAAATATGATGAGAAAACATATAAGAGGGAGCTGGATTTGGACACAGCAACAGCAAGAGTAAAATATTCTGTGGCTGATATCGAATA TACGAGGGAACACTTCGCTTCTAATCCTAATCAAGTGATTGTGACAAAGATTTCTGGGAGCAAACCAGGGTCTGTATCATTTACAGTGTCTCTGGATAGT AAGATGAGTCATCATTCATATGTAAAAGGTGAGAATCAGATTATAATAGAAGGAAGTTGTCCTGGTAACAGGTATGCACAAAAGCTGAATGAAAATGACA GTCCACAGGGAATTCAGTTTACTGCAATTCTCGATTTACAAGTTAGTGAGGCCAGAGGACTGGTTCGTGTTTCAGAAGATTCGAAATTGAGGGTTGAAGG TTCAGACTGGGCTGTTTTACTTTTAGTGTCCTCGTCTTCATTTGACGGGCCATTTACTAAGCCTATCGATTCCAAGAAGAACCCTACTTCAGACTCCCTG AGTGTATTAAAGTCAATAGGCAATTTGTCGTACGTTGATCTATATGCACATCATTTGGATGATTATCAGAGTCTTTTTCATCGTGTTTCACTCCAGCTTT CAAAAAGCTCCAAGAATGTTTCAGGAAATGCATCTTTGACTAGAAAGGAACATATGCCCTTTAAGAGTGATATATCTTTGAATGGAAGTGAAGATGATAC AGTTTCGACTGCAGAGAGGGTGAAAGCCTTTCAAACTGATGAAGATCCATCCTTGGTGGAGCTTCTATTCCAATATGGTCGATATTTGCTTATTTCTTGT TCAAGGCCTGGAACCCAAGTGGCAAATCTGCAGGGTATATGGAACAAGGATCTTACACCACCATGGGATGGTGCTCAACACTTGAATATAAACCTACAAA TGAACTACTGGCCTTCTCTTTCTTGTAATCTAAAAGAGTGTCAAGAACCCTTGTTTGAGTACATCTCCTCTCTGTCAATCAGCGGGAGCAGGACTGCGAA AGTGAACTACGAAGCAAAAGGTTGGGTTGCACATCAAGTTTCTGACCTGTGGGCGAAAACATCACCAGATGCAGGTCAAGCTTTATGGGCTTTGTGGCCA ATGGGTGGCGCCTGGCTTTGTACACACTTGTGGGAGCATTATACTTACGCGAAGGACAAAGATTTTCTAAGAGATAAGGCATACCCTTTATTGGAAGGAT GTACATCATTTCTGTTGGATTGGTTGATTGAAGGGCCTGGAGGATATCTGGAAACCAACCCGTCAACTTCTCCAGAACATATGTTTATTGCTCCAGATGG TAAACCTGCAAGTGTCAGCTACTCATCAACTATGGACATGTCAATCATAAAAGAAGTATTTTCTGCAATTGTTTCTGCAGCTAAGATTCTGGGAAGAAAT GAGGATGAACTGGTTCAAAAAGTTCTTGAAGCTCTTCCTAGGCTTTTACCAACAAAAATTGCTAGAGACGGTTCCATTATGGAGTGGGCACAGGATTTTC AGGACCCAGAGGTTCACCATCGACATGTATCACACCTCTTTGGCCTTTTTCCAGGGCATACAATAACTGTAGAGAAAACTCCAGATCTATGTAAAGCTGC AGGCAATACCCTTTACAAAAGAGGAGAGGATGGTCCAGGATGGTCAACCATGTGGAAAGCTGCACTGTGGGCACGCCTTCACAACAGTGAGCATGCGTAT AGGATGGTCAAGCATTTGTTTGTCCTGGTGGACCCGGAAAATGAAGGCAATTATGAAGGAGGATTATATAGTAACTTGTTCACTGCACACCCACCTTTCC AGATTGACGCCAACTTTGGTTTTCCAGCAGCGATTGCAGAAATGCTAGTCCAGAGCACTGCGGAAGACCTGTACCTGCTCCCTGCCCTTCCTCGGGATAA GTGGGCTAATGGCTGCGTTAAAGGACTGAAAGCACGTGGCAAACTGACAGTCAATATATACTGGAAAGAAGGCGATCTTCGTGAAGTTGGGCTTTGGTCG AACGAACAGAATTCTCTTAAACGATTACATTATAGAGGAACGACAGTGAAAGCAAATTTATCGCCTGGTAGAGTTTACACATTCAATAGAACGTTGAAAT GCATTAAGAAACAACCTCTCCCATCAGCAGCTTCCTGTTGA
AA sequence Show only first row Show all	>Potri.001G299000.1 pacid=42789430 polypeptide=Potri.001G299000.1.p locus=Potri.001G299000 ID=Potri.001G299000.1.v4.1 annot-version=v4.1 MEDKEWVLVQRSTEKDWWNPSLMEDNNGESSKPLRVTFSGPAKHWTDAIPIGNGRLGAMIWGGVALETLQLNEDTLWTGIPGDYTNPNAPAALLEVRKLV DNGQYAEATTAAEKLSGNQSDVYQLLGDIKLEFDDSHLKYDEKTYKRELDLDTATARVKYSVADIEYTREHFASNPNQVIVTKISGSKPGSVSFTVSLDS KMSHHSYVKGENQIIIEGSCPGNRYAQKLNENDSPQGIQFTAILDLQVSEARGLVRVSEDSKLRVEGSDWAVLLLVSSSSFDGPFTKPIDSKKNPTSDSL SVLKSIGNLSYVDLYAHHLDDYQSLFHRVSLQLSKSSKNVSGNASLTRKEHMPFKSDISLNGSEDDTVSTAERVKAFQTDEDPSLVELLFQYGRYLLISC SRPGTQVANLQGIWNKDLTPPWDGAQHLNINLQMNYWPSLSCNLKECQEPLFEYISSLSISGSRTAKVNYEAKGWVAHQVSDLWAKTSPDAGQALWALWP MGGAWLCTHLWEHYTYAKDKDFLRDKAYPLLEGCTSFLLDWLIEGPGGYLETNPSTSPEHMFIAPDGKPASVSYSSTMDMSIIKEVFSAIVSAAKILGRN EDELVQKVLEALPRLLPTKIARDGSIMEWAQDFQDPEVHHRHVSHLFGLFPGHTITVEKTPDLCKAAGNTLYKRGEDGPGWSTMWKAALWARLHNSEHAY RMVKHLFVLVDPENEGNYEGGLYSNLFTAHPPFQIDANFGFPAAIAEMLVQSTAEDLYLLPALPRDKWANGCVKGLKARGKLTVNIYWKEGDLREVGLWS NEQNSLKRLHYRGTTVKANLSPGRVYTFNRTLKCIKKQPLPSAASC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G299000 [exp]	0	1
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Potri.015G046700 [exp]	1.41	0.8425
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Potri.013G160500 [exp]	5.74	0.7807	STA1.2
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.002G003700 [exp]	6.32	0.7436
AT5G05800			unknown protein		Potri.015G137800 [exp]	7.34	0.7911
AT2G14520			CBS domain-containing protein ...		Potri.009G082300 [exp]	10.39	0.7672
AT5G20270		HHP1	heptahelical transmembrane pro...		Potri.018G124754 [exp]	17.74	0.7178
AT3G19180		ATCDP1, ARC6H, ...	A. THALIANA CHLOROPLAST DIVISI...		Potri.012G036100 [exp]	18.70	0.7188
AT3G11410		ATPP2CA, AHG3	ARABIDOPSIS THALIANA PROTEIN P...		Potri.010G199600 [exp]	19.23	0.6911
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.006G027600 [exp]	25.80	0.7413
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Potri.001G222600 [exp]	25.98	0.7000	Pt-CIPK3.1

Compare expression of checked genes

Potri.001G299000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.