Plant FIBer expression Database

Potri.001G299100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05800 94 / 3e-21 unknown protein
AT3G11290 81 / 9e-17 unknown protein
AT3G11310 59 / 1e-09 unknown protein
AT2G19220 54 / 4e-08 unknown protein
AT2G24960 49 / 4e-06 unknown protein
AT4G02210 42 / 0.0003 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G153700
[exp]
563 / 0 AT5G05800 94 / 2e-21 unknown protein
Potri.010G132850
[exp]
554 / 0 AT5G05800 100 / 1e-23 unknown protein
Potri.003G006700
[exp]
554 / 0 AT5G05800 99 / 3e-23 unknown protein
Potri.014G026000
[exp]
551 / 0 AT5G05800 100 / 2e-23 unknown protein
Potri.003G192350
[exp]
550 / 0 AT5G05800 100 / 4e-23 unknown protein
Potri.004G230401
[exp]
550 / 0 AT5G05800 100 / 4e-23 unknown protein
Potri.014G091925
[exp]
550 / 0 AT5G05800 93 / 5e-21 unknown protein
Potri.007G062850
[exp]
550 / 0 AT5G05800 93 / 5e-21 unknown protein
Potri.013G144650
[exp]
550 / 0 AT5G05800 93 / 5e-21 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016838
[exp]
58 / 1e-09 AT2G24960 71 / 4e-14 unknown protein
Lus10014257
[exp]
52 / 3e-07 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10025958
[exp]
51 / 4e-07 AT2G24960 102 / 4e-24 unknown protein
Lus10002039
[exp]
47 / 1e-05 AT3G11290 91 / 2e-20 unknown protein
Lus10024329
[exp]
46 / 2e-05 AT5G05800 81 / 7e-17 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF12776 Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence
>Potri.001G299100.2 pacid=42790678 polypeptide=Potri.001G299100.2.p locus=Potri.001G299100 ID=Potri.001G299100.2.v4.1 annot-version=v4.1
ATGTTGCATGTATTTTGTGATATATGCATTAAGGCAATTGATATGGGAATGAGACCTAATACTCATTTCGATAAAACGGGGTGGAAATTTCTTATAACAT
CATTCAAAGAACAAACTGGCCATGCATTCACTAAAACACAGTTGAAAAACAAATGGGATGGATGCAAAAAGGATTGGAGGATATGGAATAAGCTGGTTTC
TGAAACTGGTGTTGGCTGGAATAGTGAGTTAGGCACAATTGCAGCTAGCGATGAGTGGTGGAAACAAAAAATTCAGGAAATTAGAGGAGCCAAAAAATTC
AGACATGTCGGTATTGAGCCGTCTTTGAAGAATAAATTTGACCGAATGTATTCCAACATTGTCGCAACTGGAGCGTATACATGGGCTCCTTCATCAGGTG
TACCTGCTGGTAGTGATGTCGATCCTGGTACAAGCAATGCCGACATTGCTCATGATGGTTTGGAAGAGGGCAGTGGTGATTCGGAGGAAGATGTGATTCC
AGATTTCCAGACTGACATGGCTCGAATGGTTGGAGGGATAAATATGTCTAACAGCAGCAACACAACAAGCGGTGGCAAAAGAAAAGAACGAGATCATTAT
GATGTGCGAGGTAGAAAGAAGAAAACAGCTGGAATTGGTGTTCAGCTGCTGTCAAGGTGCAATCATCTACTTGAGAGTATGTCGACTAAGAGTGATTCGA
CTTCTTTGAATATGGATCGCAAAGGTTGTAGTATTCGCGAGGTGATGGATGAGCTGCACTCAACTCCTGGAGTTTCAATTGAAGATGAGTTTCATGACTT
CGCTACGGAGTATCTCAGTTTAAGAAGGAAAAGAGAAATGTGGGCCAGTATGGGTGATAAGCAACAGAAGTTGAGATGGTTGCAACGAATGTATGCACGA
ACTAAACGTGCTTAG
AA sequence
>Potri.001G299100.2 pacid=42790678 polypeptide=Potri.001G299100.2.p locus=Potri.001G299100 ID=Potri.001G299100.2.v4.1 annot-version=v4.1
MLHVFCDICIKAIDMGMRPNTHFDKTGWKFLITSFKEQTGHAFTKTQLKNKWDGCKKDWRIWNKLVSETGVGWNSELGTIAASDEWWKQKIQEIRGAKKF
RHVGIEPSLKNKFDRMYSNIVATGAYTWAPSSGVPAGSDVDPGTSNADIAHDGLEEGSGDSEEDVIPDFQTDMARMVGGINMSNSSNTTSGGKRKERDHY
DVRGRKKKTAGIGVQLLSRCNHLLESMSTKSDSTSLNMDRKGCSIREVMDELHSTPGVSIEDEFHDFATEYLSLRRKREMWASMGDKQQKLRWLQRMYAR
TKRA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05800 unknown protein Potri.001G299100
[exp]
0 1
AT3G01930 Major facilitator superfamily ... Potri.017G064201
[exp]
6.63 0.8678
AT3G16910 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-... Potri.010G141501
[exp]
24.61 0.8160
AT5G27550 P-loop containing nucleoside t... Potri.005G031801
[exp]
25.29 0.8503
AT1G62530 Plant protein of unknown funct... Potri.003G112000
[exp]
26.49 0.7908
Potri.017G047000
[exp]
40.98 0.8257
AT3G53310 B3 REM20 AP2/B3-like transcriptional fa... Potri.003G017566
[exp]
41.49 0.8751
AT5G08450 unknown protein Potri.018G145552
[exp]
54.69 0.8078
AT3G07350 Protein of unknown function (D... Potri.009G144600
[exp]
66.99 0.8351
Potri.005G192466
[exp]
103.44 0.8184
AT5G60900 RLK1 receptor-like protein kinase 1... Potri.001G014301
[exp]
170.76 0.7927

Potri.001G299100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.