Plant FIBer expression Database

Potri.001G299200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19508 128 / 9e-41 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G094200
[exp]
161 / 8e-54 AT3G19508 129 / 7e-41 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013875
[exp]
124 / 7e-39 AT3G19508 132 / 3e-42 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0491 LYR-like PF05347 Complex1_LYR Complex 1 protein (LYR family)
Representative CDS sequence
>Potri.001G299200.1 pacid=42787967 polypeptide=Potri.001G299200.1.p locus=Potri.001G299200 ID=Potri.001G299200.1.v4.1 annot-version=v4.1
ATGCAGAAAGCATTGAGAGTGTATGGACAGGTTCTTCGGCTAGTGAGGCGGTTACCAAAGGACTCAAGGCCTTATTACGCTAAATACGCCCGCGAAAACT
TCGTCAACTACAGAGATGTCGAAGTCAGTGACACACAATTCCTCGACGAGCTCTTCCTTCGAGCATATAACCACTCCCTATGGGTTCTCAACAAGTATTC
GGTCGATGAATCAACTGCCAATAAGCTAAAGGAAATTTGTTGCGGCTGA
AA sequence
>Potri.001G299200.1 pacid=42787967 polypeptide=Potri.001G299200.1.p locus=Potri.001G299200 ID=Potri.001G299200.1.v4.1 annot-version=v4.1
MQKALRVYGQVLRLVRRLPKDSRPYYAKYARENFVNYRDVEVSDTQFLDELFLRAYNHSLWVLNKYSVDESTANKLKEICCG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G19508 unknown protein Potri.001G299200
[exp]
0 1
AT1G14990 unknown protein Potri.010G112300
[exp]
1.41 0.9156
AT5G50810 TIM8 translocase inner membrane sub... Potri.012G103400
[exp]
2.23 0.8748
AT5G60335 Thioesterase superfamily prote... Potri.006G133800
[exp]
2.82 0.8821
AT5G42450 Pentatricopeptide repeat (PPR)... Potri.006G213200
[exp]
9.16 0.8642
AT5G27660 Trypsin family protein with PD... Potri.013G018300
[exp]
16.61 0.7722
AT4G26055 unknown protein Potri.010G204200
[exp]
17.29 0.8370
AT3G01790 Ribosomal protein L13 family p... Potri.017G066000
[exp]
18.33 0.8519
AT1G48460 unknown protein Potri.014G038800
[exp]
19.89 0.8764
AT1G15220 ATCCMH cytochrome c biogenesis protei... Potri.003G052000
[exp]
20.78 0.7960
Potri.005G027500
[exp]
21.42 0.8599

Potri.001G299200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.