Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 252 / 3e-85 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 64 / 3e-13 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 413 / 7e-149 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 383 / 5e-137 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 328 / 4e-115 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 285 / 3e-98 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 57 / 2e-09 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019806 [exp] 284 / 1e-97 AT2G15220 279 / 8e-96 Plant basic secretory protein (BSP) family protein (.1) Lus10019807 [exp] 258 / 3e-87 AT2G15220 229 / 5e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10019803 [exp] 254 / 4e-86 AT2G15220 231 / 4e-77 Plant basic secretory protein (BSP) family protein (.1) Lus10014106 [exp] 251 / 1e-84 AT2G15220 230 / 2e-76 Plant basic secretory protein (BSP) family protein (.1) Lus10026579 [exp] 231 / 9e-77 AT2G15220 226 / 1e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 231 / 2e-76 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1) Lus10014107 [exp] 229 / 2e-75 AT2G15220 222 / 2e-72 Plant basic secretory protein (BSP) family protein (.1) Lus10013866 [exp] 219 / 2e-72 AT2G15220 202 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10019805 [exp] 217 / 3e-71 AT2G15220 213 / 8e-70 Plant basic secretory protein (BSP) family protein (.1) Lus10013868 [exp] 215 / 2e-70 AT2G15220 217 / 3e-71 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF04450 [poplar] [flax] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Potri.001G299400.1 pacid=42790155 polypeptide=Potri.001G299400.1.p locus=Potri.001G299400 ID=Potri.001G299400.1.v4.1 annot-version=v4.1 ATGTTTCACCATGTTTATGTTCTCTCTTTGCTAGTACTCCTAGCAATCAACAAGGTTTCCGCAGTGGACTACACTGTCACCAACAGAGCCAGTGCAACCG CTGGTGGAGCCCGATTCACCAGGGACATCGGGATCGATTACAGCAAGAAAACACTCGCATCTGCCACAGATTTCATATGGAGAACCTTAAAGCAATCTAA TGCCGCCGGCAGAAAAAATGTTCAAACAGTCAACTTATTCATAGATGTCATGGGTGGTGTTGCCTATGCAATCGACAATGAAATCCATGTTAGCAACGAT TATATAGGAAACTATTCAGGTGATGTCAGAAGAGAAATCACTGGGGTGCTTTACCATGAAATGGCACACATATGGCAATGGAATGGTAATGGAAAAGCAC CAGGAGGACTAATTGAAGGGATTGCTGATTTTGTAAGGTTGAAGGCTAATTATGCACCTAGCCATTGGGTGCAAGCAGGGCAAGGTGACAGTTGGGATCA AGGTTATGATGTTACAGCTAAGTTTCTGGACTACTGTAATGGTCTTAGAAATGGGTTTGTTGCTAAACTTAACAAGAAAATGAAGACTGGTTATAGTGCT CAGTACTTTGTTGATCTGCTAGGGAAGACAGTTGATCAGCTTTGGAAAGACTACAAGGCCAAGTATGGAAAATAG
AA sequence Show only first row Show all	>Potri.001G299400.1 pacid=42790155 polypeptide=Potri.001G299400.1.p locus=Potri.001G299400 ID=Potri.001G299400.1.v4.1 annot-version=v4.1 MFHHVYVLSLLVLLAINKVSAVDYTVTNRASATAGGARFTRDIGIDYSKKTLASATDFIWRTLKQSNAAGRKNVQTVNLFIDVMGGVAYAIDNEIHVSND YIGNYSGDVRREITGVLYHEMAHIWQWNGNGKAPGGLIEGIADFVRLKANYAPSHWVQAGQGDSWDQGYDVTAKFLDYCNGLRNGFVAKLNKKMKTGYSA QYFVDLLGKTVDQLWKDYKAKYGK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15220			Plant basic secretory protein ...		Potri.001G299400 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Potri.001G299500 [exp]	1.00	0.9057
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.001G213300 [exp]	4.47	0.7866
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.005G015400 [exp]	8.36	0.7421
AT3G25400			unknown protein		Potri.008G168700 [exp]	12.24	0.7617
AT1G76460			RNA-binding (RRM/RBD/RNP motif...		Potri.002G004600 [exp]	14.49	0.6873
AT5G05960			Bifunctional inhibitor/lipid-t...		Potri.010G196300 [exp]	15.49	0.7797
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Potri.019G034800 [exp]	18.73	0.6894	Pt-GDH1.1
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Potri.002G074800 [exp]	19.33	0.7552	Pt-ACR3.1
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G037500 [exp]	20.61	0.6967
AT3G47510			unknown protein		Potri.015G062300 [exp]	22.91	0.7763

Compare expression of checked genes

Potri.001G299400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.