Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49800 47 / 3e-08 unknown protein AT2G23270 37 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G049500 [exp] 58 / 2e-12 AT4G37290 48 / 1e-08 unknown protein Potri.005G142900 [exp] 53 / 2e-10 AT4G37290 44 / 4e-07 unknown protein Potri.014G022300 [exp] 50 / 2e-09 ND / Potri.016G015600 [exp] 49 / 4e-09 AT4G37290 45 / 2e-07 unknown protein Potri.014G022200 [exp] 47 / 5e-08 ND / Potri.006G008066 [exp] 44 / 1e-06 AT2G23270 45 / 2e-06 unknown protein Potri.009G095600 [exp] 42 / 4e-06 AT1G49800 / unknown protein Potri.001G299800 [exp] 40 / 1e-05 AT1G49800 44 / 1e-06 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010255 [exp] 51 / 1e-09 AT4G37290 54 / 6e-11 unknown protein Lus10019310 [exp] 43 / 2e-06 AT4G37290 56 / 1e-11 unknown protein Lus10011512 [exp] 40 / 2e-05 AT4G37290 57 / 3e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G299900.2 pacid=42790078 polypeptide=Potri.001G299900.2.p locus=Potri.001G299900 ID=Potri.001G299900.2.v4.1 annot-version=v4.1 ATGTCTAGAAAACTAAGATCTCTATGTTTTCTATACCTCTGGTTTAGCACTGTTCTTTTCCAATCCGAAGCTCGGCATTTGAATGGCTTGAGGGTGGCTA GTTCTTCCAAGAATATGGAGTATTCCTTCACTAGATTAGTCCTTCGAGGTATAAAGCAATCTGGGCCAAGCCAAGGCGGTCCAGGCCACAGATCAGGAAA TGCTCAGCTTCTTGGACAGCCTACAAACTCCGGTCCGAGCCCTGGCGTAGGACACAAATACTCTGTAGGCATGCACTACTAG
AA sequence Show only first row Show all	>Potri.001G299900.2 pacid=42790078 polypeptide=Potri.001G299900.2.p locus=Potri.001G299900 ID=Potri.001G299900.2.v4.1 annot-version=v4.1 MSRKLRSLCFLYLWFSTVLFQSEARHLNGLRVASSSKNMEYSFTRLVLRGIKQSGPSQGGPGHRSGNAQLLGQPTNSGPSPGVGHKYSVGMHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49800			unknown protein		Potri.001G299900 [exp]	0	1
AT2G38870			Serine protease inhibitor, pot...		Potri.016G078900 [exp]	3.46	0.8007
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.006G164516 [exp]	4.00	0.8195
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Potri.003G088800 [exp]	24.85	0.7942
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.015G006000 [exp]	36.46	0.7872
AT4G00910			Aluminium activated malate tra...		Potri.001G085900 [exp]	44.03	0.7788
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134501 [exp]	51.28	0.7764
AT5G15180			Peroxidase superfamily protein...		Potri.007G122200 [exp]	52.53	0.7742
AT1G65570			Pectin lyase-like superfamily ...		Potri.010G177601 [exp]	59.27	0.7720
AT3G09440			Heat shock protein 70 (Hsp 70)...		Potri.008G054766 [exp]	60.00	0.6910
AT5G04950		ATNAS1	ARABIDOPSIS THALIANA NICOTIANA...		Potri.004G193400 [exp]	69.60	0.7666

Compare expression of checked genes

Potri.001G299900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.