Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15240 343 / 4e-120 UNC-50 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095900 [exp] 397 / 9e-142 AT2G15240 379 / 2e-134 UNC-50 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002813 [exp] 239 / 4e-80 AT2G15240 281 / 8e-97 UNC-50 family protein (.1) Lus10027865 [exp] 209 / 3e-68 AT2G15240 215 / 7e-71 UNC-50 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05216 [poplar] [flax] UNC-50 UNC-50 family
Representative CDS sequence Show only first row Show all	>Potri.001G300100.1 pacid=42789269 polypeptide=Potri.001G300100.1.p locus=Potri.001G300100 ID=Potri.001G300100.1.v4.1 annot-version=v4.1 ATGCTGCCTACAACATCGAAAGGGCGTGCATCATCGTCCTCCACTTCTCGAGTTAACTCCTCCACTTTCCCTCAATACCTCCGTCGAATTATCAAGTGGC AACAAATGGACATTGAATACACTTTCTGGCAAATGCTTTACTTGTGCACCTCACCGAAAGTTGTCTATCAGCATACGAAGTTTCACAAACAAACTAAGAA TCAATGGGCACGTGATGACCCTGCTTTTGTTGTTATCTCCAGCCTCCTTTTGGCAGTCGCAGCTTTGGCTTATTGTGCTGCGTATGACCACAGTGCTGGA CATGCTGTTTTTGTAGTTATTTCTGTATTACTTTTTCATTTTTTAATTACTGGAGCTGGTCTGGCTACATGTTGTTGGTTCCTAACTAATGCTTACCTTC GGGAGGAGGCTCCAAATAGTCATGTTGTTGAGCAACGGGTTGAATGGCTATATGCGTTTGATGTGCACTGCAATTCTTTCTTCCCAATGTTTGTCATGCT TTATGTTATACATTATTTCCTGTCACCCATTCTAGTTGCCCATGGTTTCATACCTGTATTGCTGTCGAACCTGCTGTTCATGGTGGCAGCCTCGTACTAT CATTACCTCAACTTTTTAGGCTATTATGTGTTGCCCTTCCTGGAGAGAACAACATTTTTCCTCTATCCAATCGGTCTTGTCATTGTCCTATCTCCTATTT TGATTTTAAGTGGCTTCAATCCTTCAAGATATTTAATGAATGTGTACTTTAGTCAAAGGGTGTGA
AA sequence Show only first row Show all	>Potri.001G300100.1 pacid=42789269 polypeptide=Potri.001G300100.1.p locus=Potri.001G300100 ID=Potri.001G300100.1.v4.1 annot-version=v4.1 MLPTTSKGRASSSSTSRVNSSTFPQYLRRIIKWQQMDIEYTFWQMLYLCTSPKVVYQHTKFHKQTKNQWARDDPAFVVISSLLLAVAALAYCAAYDHSAG HAVFVVISVLLFHFLITGAGLATCCWFLTNAYLREEAPNSHVVEQRVEWLYAFDVHCNSFFPMFVMLYVIHYFLSPILVAHGFIPVLLSNLLFMVAASYY HYLNFLGYYVLPFLERTTFFLYPIGLVIVLSPILILSGFNPSRYLMNVYFSQRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15240			UNC-50 family protein (.1)		Potri.001G300100 [exp]	0	1
AT5G42090			Lung seven transmembrane recep...		Potri.001G083100 [exp]	1.73	0.8139
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Potri.010G001900 [exp]	3.31	0.8460	NPSN12.1
AT4G24330			Protein of unknown function (D...		Potri.004G223000 [exp]	3.74	0.8330
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Potri.014G075300 [exp]	7.74	0.7889
AT5G22120			unknown protein		Potri.001G216500 [exp]	19.07	0.7622
AT3G24040			Core-2/I-branching beta-1,6-N-...		Potri.001G053800 [exp]	32.17	0.8041
AT2G20760			Clathrin light chain protein (...		Potri.004G040100 [exp]	33.40	0.8054
AT3G04830			Protein prenylyltransferase su...		Potri.005G051300 [exp]	46.13	0.7523
AT4G09810			Nucleotide-sugar transporter f...		Potri.005G196500 [exp]	47.54	0.7163
AT5G40580		PBB2	20S proteasome beta subunit PB...		Potri.017G071100 [exp]	49.20	0.7952	PBB1.1

Compare expression of checked genes

Potri.001G300100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.