Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15290 331 / 3e-114 ATTIC21, TIC21, CIA5, PIC1 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096300 [exp] 480 / 3e-173 AT2G15290 322 / 2e-110 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014100 [exp] 338 / 6e-117 AT2G15290 328 / 3e-113 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1) Lus10019814 [exp] 330 / 6e-114 AT2G15290 325 / 6e-112 PERMEASE IN CHLOROPLASTS 1, CHLOROPLAST IMPORT APPARATUS 5, translocon at inner membrane of chloroplasts 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12263 [poplar] [flax] DUF3611 Protein of unknown function (DUF3611)
Representative CDS sequence Show only first row Show all	>Potri.001G300500.1 pacid=42790859 polypeptide=Potri.001G300500.1.p locus=Potri.001G300500 ID=Potri.001G300500.1.v4.1 annot-version=v4.1 ATGCAAACGCTACTGATGCCGGCAGTTCGCTCCGGCACGGCGGCATCCATGGCGGCGGTTCCAACGCCTCCCCTTATCCACCGTGAAAAACACCTACCTC TCCTCCCTCCTCCAAACTCCATCCTAATCTTTCACAAATCCACACAACCTCTCCCATCATTCTCTTACATTAGCTCATTATCTATTTATGATCATCTTAG GAACAAAACACCAAAAAAATTATTTACCCAAACAAACGCTTCTAATGCAACTGCTCCTGCTTTCAATTCCCAAAACGACGAGGCAGAAAGGGCAAAACTC GCTCAGGTGGCTAAGAGATTAGAGAATACATCAAGGTATTTTAAGCGGTTGGGTAGTTTAGGATTTTGGGGGCAGCTAATATGTAGTACAGTGGCAGCTG TGATTCTTTCCTTTTCTGTGGTTGTCACTGGGAAGATCACTTCGCCTCCCACTTTTTATGCTACTCTTGGTGGCATTGCAGCTGCATTCATTTCTGTTTT CTGGTCATTTGGGTACATCCGGCTTTCTGAGAAGCTCCGAAAAACTGCCAATGATCCTTCCAAGGCACCTCCTCGTGCTGATGTTGTGAAAAGCTTGAAA AATGGCATAATACTGAATTTGTTGGGAATGGGTGCTGCCATTCTTGGGATGCAAGCCACAGTTGGATTGTTGGTTGCAAAGGCCCTAACCTCTTCTGCAA ATCCTTATTACCAGCAAATCTCTCCTGGTTACAGTCCAGTTCTTGCATTGGATGTGTTTTTGGTGCAGGCATCAGCGAACACCATCCTTTCTCACTTCCT GGGGCTTGTATTCTCCTCGGAACTTTTACGCTCAGTGACACTACCACCATCAGAAAATATTCCAGTCTTTAAGGTGGCATAA
AA sequence Show only first row Show all	>Potri.001G300500.1 pacid=42790859 polypeptide=Potri.001G300500.1.p locus=Potri.001G300500 ID=Potri.001G300500.1.v4.1 annot-version=v4.1 MQTLLMPAVRSGTAASMAAVPTPPLIHREKHLPLLPPPNSILIFHKSTQPLPSFSYISSLSIYDHLRNKTPKKLFTQTNASNATAPAFNSQNDEAERAKL AQVAKRLENTSRYFKRLGSLGFWGQLICSTVAAVILSFSVVVTGKITSPPTFYATLGGIAAAFISVFWSFGYIRLSEKLRKTANDPSKAPPRADVVKSLK NGIILNLLGMGAAILGMQATVGLLVAKALTSSANPYYQQISPGYSPVLALDVFLVQASANTILSHFLGLVFSSELLRSVTLPPSENIPVFKVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Potri.001G300500 [exp]	0	1
AT2G43750		CPACS1, ATCS-B,...	CHLOROPLAST O-ACETYLSERINE SUL...		Potri.013G127800 [exp]	1.41	0.9526
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.001G115900 [exp]	12.32	0.9445	CLPR2.1
AT4G34730			ribosome-binding factor A fami...		Potri.004G164200 [exp]	17.57	0.9392
AT2G32480		ARASP	ARABIDOPSIS SERIN PROTEASE (.1...		Potri.002G228600 [exp]	23.91	0.9330
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.008G012500 [exp]	25.21	0.9388	NAP7.2
AT2G41950			unknown protein		Potri.006G194600 [exp]	25.69	0.9367
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	25.80	0.9366
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Potri.010G065100 [exp]	30.00	0.9310
AT5G16660			unknown protein		Potri.013G078100 [exp]	34.98	0.9304
AT5G17560			BolA-like family protein (.1)		Potri.013G074100 [exp]	35.35	0.9085

Compare expression of checked genes

Potri.001G300500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.