Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34220 621 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G37250 590 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G67280 582 / 0 RLK receptor-like kinase (.1) AT2G15300 577 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G23300 531 / 8e-179 Leucine-rich repeat protein kinase family protein (.1) AT2G01210 386 / 3e-123 Leucine-rich repeat protein kinase family protein (.1) AT1G67510 325 / 3e-100 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 219 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 215 / 2e-60 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 186 / 5e-50 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G142300 [exp] 681 / 0 AT4G37250 733 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G048800 [exp] 674 / 0 AT2G23300 706 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G124300 [exp] 378 / 2e-120 AT2G01210 987 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120100 [exp] 377 / 4e-120 AT2G01210 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G058200 [exp] 329 / 6e-101 AT1G67510 989 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G176900 [exp] 323 / 2e-99 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 191 / 9e-52 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.004G095700 [exp] 192 / 1e-51 AT2G01210 735 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G117200 [exp] 187 / 5e-50 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014098 [exp] 720 / 0 AT4G37250 710 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030333 [exp] 638 / 0 AT4G37250 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010263 [exp] 619 / 0 AT4G37250 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019315 [exp] 543 / 0 AT4G37250 728 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011509 [exp] 538 / 0 AT4G37250 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019816 [exp] 323 / 5e-105 AT5G67280 275 / 8e-87 receptor-like kinase (.1) Lus10034108 [exp] 318 / 6e-98 AT2G01210 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10043480 [exp] 312 / 1e-95 AT2G01210 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037006 [exp] 197 / 1e-53 AT1G67510 915 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031337 [exp] 197 / 2e-53 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G300700.1 pacid=42793359 polypeptide=Potri.001G300700.1.p locus=Potri.001G300700 ID=Potri.001G300700.1.v4.1 annot-version=v4.1 ATGAGTTCCAGTAGCATCAATTATCTCCATTTCTTTGCTTTTTTCCTTCTTGGGATTGCACTTCCAACCTTTGCTCTCAACACAGATGGGGTACTTTTGC TTTCTTTCAAGTACTCCATCCTTAGAGACCCCTTATCAGTCTTGGAAACCTGGAACTATGAAGATAAAACACCATGCTTTTGGAAAGGAGTGACATGCAC AGAATTAGGCCTGCCGGGAACACCAGATATGTTCAGGGTCACAAGTTTAGTCCTCCCCAATAGTCAGCTTCTGGGTTCTATCCCACCAGACTTGGGCTAC GTTGAACACCTAAGACATCTTGATCTTTCTAACAATTTCTTGAATGGGTCATTGCCAAGTTCGTTTTTTAATGCAACTGAGCTACAAGTGATTTCTCTTT CAAGCAATGAGATCTCCGGTGAGTTGCCTGAGTCTATCGGTGCATTGAAGAGTTTACAGCTGTTGAATCTTTCTGATAATGCCTTGGCTGGGAAGGTACC TGAATATTTGACAGCTTTGCAAAATCTTACAGTTCTTTCATTAAGGACTAATTACTTTTCAGGTTCTGTTCCTAGTGGCTTCAATTCTGTTGAGGTGTTA GATCTGTCTTCTAATCTACTCAATGGTTCTTTGCCTCTTAATTTTGGTGGGGATAATTTGCATTACTTGAATCTCTCTTACAACAAGCTCACAGGACCAA TTTCACAAGCTTTTGCAAAGAGAATTCCAGAGAAAGCAAGTATTGATCTCTCATTCAACAATCTAACTGGAGCAATCCCAGAGTCTCTATCTTTGCTCAG CCAAAAAACAGATTCTTTTAGAGGAAACCTGGATCTTTGTGGAAAACCTTTGTCAAATCTTTGCTCAATACCTTCAACCATCTCTACTCCGCCAAATATT TCAACTACTTCACCAGCTATTGCAGTCATACCCAAATCATTGGACTCGGGCTCCCCACAACTAAACTCAACAGGAACCAGTCCAAGTTCCACTCGAAATC AAGCCAAAAGTGGGCTAAAACCAGCCACAATTGTAGCCATTGCAGTCTCGGACTTGGCCGGTATAGCCATTCTTGCTTTGGTCATTCTTTATGTGTACCA AATAAGAAAAAAGAAGACACTCGTCAACCAAACCAACCCACCGAATAAAGAGCGAAAACTCCCACTTCCTTCAACAACCGTTGCAGTAAAAGAAGAGATC GAAACAAGGAAGCCTATAAATTGGCCGTGCCTAACGTTAAAAGGAGACGAAACATCGGGAACAACCACTTCTGATGACGATCAAGACAACGAAGATACCA ACAACGCAAACTGCAGCGAGAGCAATCAAGAAAAAGATAGTAAGCTGGTGGTACTAGATGGGGAGACAGAACTTGAGTTGGAAACATTGCTAAAAGCATC AGCTTATGTACTGGGAACAAGCGGAAGAAGCATCGTGTACAAAGCAGTTCTTGGTGATGGTACTGCTTTTGCAGTGAGGAGGATTGGAGAGAGTGGAGTT GAGAGAAGAGACTTTGAGAATCAAGTGAGGCTTATTGCCAAATTAAAGCATCCAAATTTGGTTAAGATTTGTGGTTTTTACTGGGGAGGTGATGAGAAGC TTGTTGTCTATGATTATGTCTGCAACGGCAGCCTCGCAACCGCTGGTTACAGAAAACCAGGTTCATCACCGAGTCATCTACCACTTGAAGTGCGGTTCAA GATAGCAAAAGGAGTGGCTAGAGGACTAGCTTTCATTCACGGGAAGAAACATGTGCATGGCAGCATTAAACCAAACAACATCCTCTTGAACCTTGACATG GAGCCAATAATCTCGGATTTCGGACTGGACCGGCTTGTATTAGGCAACAATAGCAACAAAGCGAGCAGCTCGAGTCGCCATTTCAGTAGCCAAAGGTTCG CCTCCACGACACAAGACCTCTCTATAAATGCCAGCCACTATGCACCTTCCAACTCCTCCGCGGCAAGCTCATTGCCATATCAAGCGCCCGAGTCGTTAAA GAATCCAAAGCCAAGCCCTAAATGGGATGTCTATTCATTTGGCATTGTTTTGCTTGAGCTTCTCACTGGAAGAGTGTTTTCAGATGGAGACTTGAGCCAG TGGACTGCCGGTTCAATCATGGAGGACAAGAACCGGGTTCTGAGATTGGCTGATGTGGCAATCCGGACCAACGTGGAGGTTAAGGAGGATGCCATTTTGG CATGTTTGAAGATGGGTTTTAGCTGTGCTTCTTTTGTACCCCAAAAGAGACCGTCCATGAAAGAAGCGCTTCAAGTCCTAGAGAAGATCCCTTGCTCTAA TGTTTCAAGCTAA
AA sequence Show only first row Show all	>Potri.001G300700.1 pacid=42793359 polypeptide=Potri.001G300700.1.p locus=Potri.001G300700 ID=Potri.001G300700.1.v4.1 annot-version=v4.1 MSSSSINYLHFFAFFLLGIALPTFALNTDGVLLLSFKYSILRDPLSVLETWNYEDKTPCFWKGVTCTELGLPGTPDMFRVTSLVLPNSQLLGSIPPDLGY VEHLRHLDLSNNFLNGSLPSSFFNATELQVISLSSNEISGELPESIGALKSLQLLNLSDNALAGKVPEYLTALQNLTVLSLRTNYFSGSVPSGFNSVEVL DLSSNLLNGSLPLNFGGDNLHYLNLSYNKLTGPISQAFAKRIPEKASIDLSFNNLTGAIPESLSLLSQKTDSFRGNLDLCGKPLSNLCSIPSTISTPPNI STTSPAIAVIPKSLDSGSPQLNSTGTSPSSTRNQAKSGLKPATIVAIAVSDLAGIAILALVILYVYQIRKKKTLVNQTNPPNKERKLPLPSTTVAVKEEI ETRKPINWPCLTLKGDETSGTTTSDDDQDNEDTNNANCSESNQEKDSKLVVLDGETELELETLLKASAYVLGTSGRSIVYKAVLGDGTAFAVRRIGESGV ERRDFENQVRLIAKLKHPNLVKICGFYWGGDEKLVVYDYVCNGSLATAGYRKPGSSPSHLPLEVRFKIAKGVARGLAFIHGKKHVHGSIKPNNILLNLDM EPIISDFGLDRLVLGNNSNKASSSSRHFSSQRFASTTQDLSINASHYAPSNSSAASSLPYQAPESLKNPKPSPKWDVYSFGIVLLELLTGRVFSDGDLSQ WTAGSIMEDKNRVLRLADVAIRTNVEVKEDAILACLKMGFSCASFVPQKRPSMKEALQVLEKIPCSNVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34220			Leucine-rich repeat protein ki...		Potri.001G300700 [exp]	0	1
AT1G21830			unknown protein		Potri.002G083900 [exp]	11.13	0.7858
AT5G07240		IQD24	IQ-domain 24 (.1)		Potri.015G142200 [exp]	32.95	0.7075
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.005G124000 [exp]	39.98	0.7685
AT3G16070			unknown protein		Potri.001G182500 [exp]	53.21	0.7717
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	80.49	0.7328
AT1G79720			Eukaryotic aspartyl protease f...		Potri.001G041700 [exp]	106.48	0.7007
AT3G49220			Plant invertase/pectin methyle...		Potri.015G013700 [exp]	110.23	0.6908	PME2.12
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	111.12	0.7271
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	119.84	0.7428
AT5G45280			Pectinacetylesterase family pr...		Potri.004G233900 [exp]	146.53	0.7099

Compare expression of checked genes

Potri.001G300700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.