Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34215 310 / 6e-107 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) AT3G53010 248 / 5e-82 Domain of unknown function (DUF303) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096400 [exp] 357 / 1e-125 AT4G34215 315 / 4e-109 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.014G022700 [exp] 272 / 4e-92 AT4G34215 282 / 7e-96 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Potri.014G022600 [exp] 258 / 4e-86 AT3G53010 301 / 2e-102 Domain of unknown function (DUF303) (.1) Potri.009G096500 [exp] 151 / 4e-46 AT4G34215 117 / 3e-33 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014097 [exp] 324 / 2e-112 AT4G34215 326 / 4e-113 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10001128 [exp] 240 / 2e-79 AT4G34215 260 / 4e-87 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10001129 [exp] 241 / 6e-79 AT3G53010 296 / 6e-100 Domain of unknown function (DUF303) (.1) Lus10019817 [exp] 202 / 2e-65 AT4G34215 207 / 7e-68 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042636 [exp] 176 / 2e-54 AT3G53010 220 / 3e-71 Domain of unknown function (DUF303) (.1) Lus10042634 [exp] 107 / 5e-29 AT4G34215 122 / 7e-35 Domain of unknown function (DUF303) (.1), Domain of unknown function (DUF303) (.2) Lus10042635 [exp] 76 / 1e-15 AT3G53010 78 / 2e-16 Domain of unknown function (DUF303) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF03629 [poplar] [flax] SASA Carbohydrate esterase, sialic acid-specific acetylesterase
Representative CDS sequence Show only first row Show all	>Potri.001G300800.2 pacid=42793560 polypeptide=Potri.001G300800.2.p locus=Potri.001G300800 ID=Potri.001G300800.2.v4.1 annot-version=v4.1 ATGGAAGAAATACCCAAAACAAGCAAGCAGATCTTCATATTATCAGGGCAGAGCAACATGGCCGGTCGCGGCGGCGTTTGCAAAGACCACCACCACCACA ACCACCAGTACTGGGACAAGTTAGTCCCACCAGAATGTCAACCCCATCAAGACATCTTCCGTTTTTCAGCCAAGCTCCATTGGGAACAGGCACATGAACC ACTCCATGCTGACATCGACTCGAAAAAAGTTTGTGGGGTTGGACCCGGCATGTCGTTTGCTAACATGGTGAGGGAAAAGATGAGGGTGGTGGTGGGATTG GTGCCGTGTGCGGTGGGTGGGACGGCCATCACGCGGTGGGGGCGTGGAGAGGTATTGTATGAGAATATGGTGAAAAGGGCTAAAGAGAGTGTCGAAGATG GTGGGGAAATCAAGGGGTTGCTATGGTACCAAGGAGAGAGTGACACGTCGGATATTCACGATGCCGAGGTTTACCAGGGGAACATGGAGAAGCTTATTGA GAATGTTAGAGAGGATCTTGGTCTGCCTTCCCTTCCAATTGTTATGGTAGCAATTACATCAGGAGATGGCAAGTATGTGGATAAGGTGAGAGAAGCACAG CTAAGGATTAATCTACCGAATGTGGTATGTGTGGATGCCATGGGATTGGATCTTAAAGACGATCATCTTCACTTAACAACTGAAGCTCAGGTTAAGTTGG GCCACATGTTGTCAGAAGTTTACCTCAAGAATTTTGCACCATCATGGAAACGTTTCTTTTCTTGCTTGCTTTGTTAA
AA sequence Show only first row Show all	>Potri.001G300800.2 pacid=42793560 polypeptide=Potri.001G300800.2.p locus=Potri.001G300800 ID=Potri.001G300800.2.v4.1 annot-version=v4.1 MEEIPKTSKQIFILSGQSNMAGRGGVCKDHHHHNHQYWDKLVPPECQPHQDIFRFSAKLHWEQAHEPLHADIDSKKVCGVGPGMSFANMVREKMRVVVGL VPCAVGGTAITRWGRGEVLYENMVKRAKESVEDGGEIKGLLWYQGESDTSDIHDAEVYQGNMEKLIENVREDLGLPSLPIVMVAITSGDGKYVDKVREAQ LRINLPNVVCVDAMGLDLKDDHLHLTTEAQVKLGHMLSEVYLKNFAPSWKRFFSCLLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34215			Domain of unknown function (DU...		Potri.001G300800 [exp]	0	1
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Potri.002G145800 [exp]	2.44	0.7393
AT2G07180			Protein kinase superfamily pro...		Potri.006G079600 [exp]	3.87	0.7630
AT1G62400		HT1	high leaf temperature 1, Prote...		Potri.015G075200 [exp]	8.12	0.6998
AT2G33640			DHHC-type zinc finger family p...		Potri.002G006900 [exp]	15.96	0.7269
AT5G14230			unknown protein		Potri.001G333600 [exp]	19.07	0.7191
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.004G039700 [exp]	23.49	0.6993
AT5G62890			Xanthine/uracil permease famil...		Potri.015G072600 [exp]	24.89	0.7272
AT5G01075			Glycosyl hydrolase family 35 p...		Potri.014G017600 [exp]	27.23	0.6916
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Potri.010G226600 [exp]	29.49	0.6900
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Potri.014G162900 [exp]	32.61	0.6661

Compare expression of checked genes

Potri.001G300800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.