Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34200 885 / 0 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 853 / 0 D-3-phosphoglycerate dehydrogenase (.1) AT1G17745 798 / 0 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT1G17744 182 / 1e-54 unknown protein AT1G72190 105 / 2e-24 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT5G14780 99 / 4e-22 FDH formate dehydrogenase (.1) AT1G12550 95 / 4e-21 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G68010 96 / 5e-21 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT1G79870 90 / 2e-19 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT2G45630 82 / 1e-16 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096600 [exp] 1012 / 0 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.014G022800 [exp] 882 / 0 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 882 / 0 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.008G009500 [exp] 834 / 0 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.010G249600 [exp] 825 / 0 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.004G175800 [exp] 102 / 4e-23 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.003G052700 [exp] 96 / 1e-21 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.013G104200 [exp] 92 / 7e-20 AT1G72190 466 / 1e-164 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.014G161300 [exp] 92 / 1e-19 AT5G14780 581 / 0.0 formate dehydrogenase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014096 [exp] 935 / 0 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10019818 [exp] 934 / 0 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10027868 [exp] 932 / 0 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10035758 [exp] 440 / 4e-148 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037333 [exp] 263 / 5e-85 AT1G17745 265 / 2e-86 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037552 [exp] 103 / 3e-24 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 98 / 3e-22 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 97 / 6e-22 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10019793 [exp] 99 / 7e-22 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10035866 [exp] 97 / 9e-22 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0325 [poplar] [flax] Form_Glyc_dh PF00389 [poplar] [flax] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL0063 [poplar] [flax] NADP_Rossmann PF07991 [poplar] [flax] IlvN Acetohydroxy acid isomeroreductase, NADPH-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G300900.1 pacid=42790883 polypeptide=Potri.001G300900.1.p locus=Potri.001G300900 ID=Potri.001G300900.1.v4.1 annot-version=v4.1 ATGGCAGCCACCACCTCCACCGCCGCCTCCAGCCTCCTCGCGACCAAGAAAAACCTCTCCTCCCTCTCCCTCACCTCCGCCAACAAACTCCCCGCTTTCT CGCCCCTCCTCACCTCCTCACGCAGACAACGTTTCATAGTCCTTTCCGCAAGCCTAAACTCAAAGCCAACAGTCCTAGTTGCAGAAAAACTAGGAGAAGC GGGTATAAATCTCTTGAAAGACTTTGCAAACGTTGACTGTTCTTACAATCTAAGCCCAGATGAACTATGTACTAAGATCTCACTCTGTGATGCGATTATT GTACGTAGCGGTACTAAAGTGAGTCGTGAAGTGTTTGAATCTTCTGGTGGTAGATTAAAGGTTGTTGGCAGAGCTGGTGTTGGTATTGATAATGTTGATC TTGCTGCTGCAACTGAACATGGATGTTTGGTTGTTAATGCTCCCACTGCTAATACCGTTGCCGCTGCAGAGCATGGGATTGCGTTGATGGCTGCAATGGC TAGAAATGTTGCTCAGGCTGATGCCTCTGTTAAAGCTGGAAAGTGGGAGAGGAACAAATATGTGGGTGTGTCACTTGTTGGGAAAACGCTTGCTGTCATG GGATTTGGAAAGGTTGGATCAGAAGTTGCTAGGCGTGCTAAGGGGCTTGGCATGCATGTGATTGCTCATGATCCATATGCCCCAGCAGATCGTGCTCGGG CAATTGGTGTGGAGCTTGTGAGCTTTGATGAAGCCATAGCAACTGCAGATTTCATCTCCTTGCACATGCCACTTACTCCAGCTACAGCAAAAATCCTCAA TGATGAGACTTTTGCAAAGATGAAGAAAGGAGTTAGGATTGTCAATGTTGCTCGTGGAGGAGTGATTGATGAAGATGCCCTAGTAAGGGCATTGGATGCT GGAATTGTTGCTCAGGCAGCACTTGATGTTTTCACCGTGGAGCCTCCTCCACAAGACAGCAAGTTAGTGCAGCATGAGAGGGTCACTGTCACCCCACATC TTGGTGCTAGTACTAAGGAAGCTCAGGAAGGTGTGGCTATTGAAATAGCAGAAGCTGTTGTTGGAGCCTTGAAAGGGGAACTTGCTTCTACTTCTGTCAA TGCACCAATGGTGCCTGCTGAGGTTCTTACTGAGCTGAAACCATATGTTGAGCTTGCTGAGAAGCTTGGGAGACTGGCTGTCCAGCTAGTGTCAGGTGGA AGTGGTGTGAAAGATGTAAAAGTGACTTATGCTTCTGCTAGGGCTCCCGATGACCTTGACACCAGGGTGCTCCGTGCAATGATCACCAAGGGTCTGATCG AGCCCATATCCAGTGTTTTTGTGAACTTGGTTAATGCTGATTTCAGCGCTAAACAGAGGGGACTAAGAATAAGTGAAGAACGCATTCTTGGAGATGGTTC ACCTGAGAGTCCACTTCACTTTATCCAGGTTCAAATCGCCAATGTGGAATCAAAATTCGCCAGTGCCATATCTGAGAATGGGGAGATTAAGGTCGAGGGA CGAGTGAAGGATGGAATTCCCCATTTGACCAAGGTTGGATCTTTTGAGGTGGATGTGAGCTTGGAAGGTAGCATTATACTATGCCGACAAGTTGATCAGC CAGGTATGATTGGCAAGGTTGGAAGCGTGTTGGGAGTAGAGAATGTCAATGTCAGCTTCATGAGTGTTGGAAGGATTGCTCCACGAAAGCAAGCTGTCAT GGCAATTGGAGTTGATGAGCAACCCAGCAAAGAAACTTTGAAAAAGATTGGCGATATCCCAGCCGTTGAAGAGTTCGTTTTCCTCAAGTTATAG
AA sequence Show only first row Show all	>Potri.001G300900.1 pacid=42790883 polypeptide=Potri.001G300900.1.p locus=Potri.001G300900 ID=Potri.001G300900.1.v4.1 annot-version=v4.1 MAATTSTAASSLLATKKNLSSLSLTSANKLPAFSPLLTSSRRQRFIVLSASLNSKPTVLVAEKLGEAGINLLKDFANVDCSYNLSPDELCTKISLCDAII VRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALMAAMARNVAQADASVKAGKWERNKYVGVSLVGKTLAVM GFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVELVSFDEAIATADFISLHMPLTPATAKILNDETFAKMKKGVRIVNVARGGVIDEDALVRALDA GIVAQAALDVFTVEPPPQDSKLVQHERVTVTPHLGASTKEAQEGVAIEIAEAVVGALKGELASTSVNAPMVPAEVLTELKPYVELAEKLGRLAVQLVSGG SGVKDVKVTYASARAPDDLDTRVLRAMITKGLIEPISSVFVNLVNADFSAKQRGLRISEERILGDGSPESPLHFIQVQIANVESKFASAISENGEIKVEG RVKDGIPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSVLGVENVNVSFMSVGRIAPRKQAVMAIGVDEQPSKETLKKIGDIPAVEEFVFLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34200		EDA9	embryo sac development arrest ...		Potri.001G300900 [exp]	0	1
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.015G129100 [exp]	1.73	0.8638
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Potri.003G059200 [exp]	3.46	0.8823
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Potri.008G099300 [exp]	5.65	0.8748	AdoMet1,SAMS.2
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Potri.013G004100 [exp]	10.00	0.8552	AdoMet_e2,Pt-SAMS.1
AT1G08760			Plant protein of unknown funct...		Potri.017G026200 [exp]	15.81	0.8359
AT5G59350			unknown protein		Potri.008G054400 [exp]	17.32	0.8333
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.014G114700 [exp]	17.43	0.8586	Pt-SAM1.1
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.007G106100 [exp]	18.97	0.8459
AT5G12470			Protein of unknown function (D...		Potri.009G051800 [exp]	20.04	0.7667
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.003G100200 [exp]	20.19	0.8165	PCBERp8

Compare expression of checked genes

Potri.001G300900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.