Plant FIBer expression Database

NHD1.2 (Potri.001G301000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol NHD1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G19490 694 / 0 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
AT1G49810 505 / 3e-176 ATNHD2 SODIUM:HYDROGEN ANTIPORTER 2, Na+/H+ antiporter 2, Na+/H+ antiporter 2, Na+/H+ antiporter 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G096700
[exp]
837 / 0 AT3G19490 687 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014094
[exp]
734 / 0 AT3G19490 858 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
Lus10019820
[exp]
732 / 0 AT3G19490 860 / 0.0 ARABIDOPSIS THALIANA NA/H ANTIPORTER 1, sodium:hydrogen antiporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0182 IT PF03600 CitMHS Citrate transporter
Representative CDS sequence
>Potri.001G301000.1 pacid=42793186 polypeptide=Potri.001G301000.1.p locus=Potri.001G301000 ID=Potri.001G301000.1.v4.1 annot-version=v4.1
ATGGCATCCCTCTCAATTGGGACACACCATTTGCACACAGCAAAGCAACTCAAGAAACATTCTTTCCACTCTATTTCTTCCACTCCTCTATCGTCACTAC
CTCACAAGTCTTCTTTTGGTTCTTCTTTGTGTAAATTAAGAGGTTCAAGAATTCTTGGTAATGGACTACTTGCTAGAGCTGAAGACAAGGCTAAAGGGTC
ATCATCACCACCTCCTTCTTCTTCAAATAAGCGACAAGGTCAACAGCCCATCATTGATAACCAGCTTCAGGATTTGGAACCAACATCCGGATCGTGTGAC
CCTTTGTGCTCACTTGATGAAACAAGCTCACAAGATTTAGAAGCCAACTACCAGCCGAGAACTGATTTGGTGAAAGCTCTTGCAGTTTTTGCTGCAGCTG
CAACAGGGGCAGTAGCAATCAACCATTCTTGGGTTGCAGCCAATCAGGATCTTGCTATGGCATTGCTTTTCGGAATAGGATATGCAGGCATTATTTTTGA
AGAGTTTCTAGCCTTCAATAAAAGTGGAGTGGGATTATTGATGGCTGTGAGTTTATGGGTAGTACGAAGCATTGGGGCTCCTTCACCTGATATAGCTGTT
TCAGAGCTGACACATGCTTCTGCAGAAGTCAGTCAAATAGTATTTTTCTTGCTTGGTGCAATGACCATCGTAGAGATAGTTGATGCTCACCAAGGATTTA
AGCTGGTTACTGACATTATAACTACTCGAAAGCCGAGGACTCTCCTTTGGGTGGTTGGTTTTGTCACTTTTCTTCTTAGTTCAGTCCTCGATAACCTGAC
ATCTACCATTGTCATGGTTTCTTTATTGAGGAAATTAGTACCTCCATCAGAATACCGCAAGCTTCTTGGAGCTGTTGTTGTGATTGCAGCGAATGCTGGT
GGTGCATGGACTCCTATTGGTGATGTTACAACCACCATGCTATGGATACATGGGCAGATATCAACATTGCCAACCATGAAGGACTTGCTTGTACCCTCTG
TTGTTTCTCTTGCTGTCCCACTGTCTCTATTGTCCTTGACTAGTGAAGTTAATGGAAAGGGACCGGACACGCCGAATGTTTTGGCATCTGAGCAGATGGC
TCCTCGAGGACAGCTTGTTTTCTCTGTGGGTATTGGAGCTTTAATTTTTGTTCCAGTGTTCAAGGCCCTGACTGGATTGCCTCCCTTCATGGGTATGCTG
CTTGGGCTTGGAGTTCTTTGGATTCTCACAGATGCTATTCATTATGGTGAATCAGAAGGGCAAAAGTTAAAAGTACCACAGGCTTTATCACGAATCGACA
CTCAAGGAGCCCTTTTCTTCCTTGGAATCCTTTTATCTGTGAGCAGTCTGGAGGCAGCAGGGCTTCTTCGTGAACTGGCAAATTACCTTGATGCGCATAT
TCCAAATATTGAACTGATTGCAAGTGCAATCGGAGTTGTGTCAGCAATTATAGACAATGTTCCACTGGTTGCAGCAACAATGGGAATGTATGATCTCTCC
TCTTTTCCGCAAGATCATGAGTTCTGGCAGTTAGTTGCATATTGTGCTGGCACTGGTGGTTCCATGCTAGTTATTGGCTCTGCCGCTGGAGTTGCTTTTA
TGGGGATGGAAAAAGTGGACTTCTTTTGGTACCTGCGGAAGGTGAGCGGTTTTGCCTTTGCCGGTTATGCTGCTGGTATTGCTGCCTACTTGACAGTTCA
TAACTTCAGCATCTCCTTACCCACGACTCTAGCTGAGCTTCCTTTCCTCTCAGGTTCATAA
AA sequence
>Potri.001G301000.1 pacid=42793186 polypeptide=Potri.001G301000.1.p locus=Potri.001G301000 ID=Potri.001G301000.1.v4.1 annot-version=v4.1
MASLSIGTHHLHTAKQLKKHSFHSISSTPLSSLPHKSSFGSSLCKLRGSRILGNGLLARAEDKAKGSSSPPPSSSNKRQGQQPIIDNQLQDLEPTSGSCD
PLCSLDETSSQDLEANYQPRTDLVKALAVFAAAATGAVAINHSWVAANQDLAMALLFGIGYAGIIFEEFLAFNKSGVGLLMAVSLWVVRSIGAPSPDIAV
SELTHASAEVSQIVFFLLGAMTIVEIVDAHQGFKLVTDIITTRKPRTLLWVVGFVTFLLSSVLDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAG
GAWTPIGDVTTTMLWIHGQISTLPTMKDLLVPSVVSLAVPLSLLSLTSEVNGKGPDTPNVLASEQMAPRGQLVFSVGIGALIFVPVFKALTGLPPFMGML
LGLGVLWILTDAIHYGESEGQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLRELANYLDAHIPNIELIASAIGVVSAIIDNVPLVAATMGMYDLS
SFPQDHEFWQLVAYCAGTGGSMLVIGSAAGVAFMGMEKVDFFWYLRKVSGFAFAGYAAGIAAYLTVHNFSISLPTTLAELPFLSGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G19490 ATNHD1 ARABIDOPSIS THALIANA NA/H ANTI... Potri.001G301000
[exp]
0 1 NHD1.2
AT5G09995 unknown protein Potri.010G003700
[exp]
1.00 0.9841
Potri.010G145700
[exp]
2.64 0.9779
AT3G18680 Amino acid kinase family prote... Potri.005G057700
[exp]
3.60 0.9722
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.005G058400
[exp]
3.74 0.9808 PtrTrxm3
AT4G37510 Ribonuclease III family protei... Potri.007G053000
[exp]
4.89 0.9780
AT2G22780 PMDH1 peroxisomal NAD-malate dehydro... Potri.001G287400
[exp]
5.00 0.9787 MDHG.2
AT3G26900 ATSKL1 Arabidopsis thaliana shikimate... Potri.017G062800
[exp]
5.47 0.9800 SK1
AT2G31890 ATRAP RAP (.1) Potri.017G001600
[exp]
7.34 0.9708
AT5G66055 EMB16, EMB2036,... EMBRYO DEFECTIVE 2036, EMBRYO ... Potri.007G060400
[exp]
7.48 0.9779
AT3G09210 PTAC13 plastid transcriptionally acti... Potri.006G094800
[exp]
8.00 0.9787

Potri.001G301000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.