Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SEP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34190 141 / 9e-44 SEP1 stress enhanced protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096800 [exp] 241 / 1e-83 AT4G34190 130 / 1e-39 stress enhanced protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027871 [exp] 138 / 1e-42 AT4G34190 128 / 1e-38 stress enhanced protein 1 (.1) Lus10014093 [exp] 135 / 2e-41 AT4G34190 116 / 7e-34 stress enhanced protein 1 (.1) Lus10019821 [exp] 134 / 5e-41 AT4G34190 119 / 6e-35 stress enhanced protein 1 (.1) Lus10002821 [exp] 117 / 1e-33 AT4G34190 119 / 2e-34 stress enhanced protein 1 (.1) Lus10002818 [exp] 79 / 3e-20 AT4G34190 87 / 1e-23 stress enhanced protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G301100.2 pacid=42788499 polypeptide=Potri.001G301100.2.p locus=Potri.001G301100 ID=Potri.001G301100.2.v4.1 annot-version=v4.1 ATGGCTGCAGTAGCTCAAGTCACTGCTTCTCTTTCCCTCTCCATTCGCGATGCTAGTGCTGTTGGCTCATCAAGAACCCACCTTCCCATTTCTCGATTGC CCACTTTTACTTTTGCACGAAATGGGACTACTTTCGCTACTGGGTCTCCATTTTTGATATCAAGAACTTCTCATCAGAAAAAGGCTGCTGGGAGAGCAAC GTTTGTTTCTGTAAGATGTGAGCAAAATACCCAGGATGGCAGCAGTGTGGATGTATGGATTGGACGGCTTGCAATGGTTGCCTTTGCTGGGGCCATCAGT GTTGAAATAGCTACGGGCAAAGGACTTTTGGAGAATTTTGGACTCACAAACCCATTGCCTACAGTGGCCTTGGCAGTAACTGGATTGATGGGTGTTTTGG CAGCTGTGTTTATCTTCCAATCGGCATCTAAGAATTGA
AA sequence Show only first row Show all	>Potri.001G301100.2 pacid=42788499 polypeptide=Potri.001G301100.2.p locus=Potri.001G301100 ID=Potri.001G301100.2.v4.1 annot-version=v4.1 MAAVAQVTASLSLSIRDASAVGSSRTHLPISRLPTFTFARNGTTFATGSPFLISRTSHQKKAAGRATFVSVRCEQNTQDGSSVDVWIGRLAMVAFAGAIS VEIATGKGLLENFGLTNPLPTVALAVTGLMGVLAAVFIFQSASKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Potri.001G301100 [exp]	0	1	SEP1.1
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Potri.001G151300 [exp]	1.41	0.9863	Lil3_3,Pt-LIL3.1
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.001G297400 [exp]	2.00	0.9803
AT1G42550		PMI1	plastid movement impaired1 (.1...		Potri.005G255500 [exp]	2.23	0.9784
AT2G24090			Ribosomal protein L35 (.1)		Potri.018G102700 [exp]	3.16	0.9863
AT5G65220			Ribosomal L29 family protein ...		Potri.007G093700 [exp]	5.47	0.9831
AT1G78995			unknown protein		Potri.007G003600 [exp]	6.70	0.9763
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.010G065600 [exp]	8.24	0.9710	RNP1.1
AT5G07900			Mitochondrial transcription te...		Potri.001G035200 [exp]	8.48	0.9763
AT1G49975			unknown protein		Potri.001G292000 [exp]	8.77	0.9773
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Potri.007G034300 [exp]	8.83	0.9777

Compare expression of checked genes

Potri.001G301100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.