Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62290 284 / 4e-99 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT1G10630 284 / 4e-99 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G70490 283 / 7e-99 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G23490 283 / 7e-99 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT2G47170 283 / 9e-99 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G14670 281 / 4e-98 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G15310 268 / 1e-92 ATARFB1A ADP-ribosylation factor B1A (.1) AT5G17060 209 / 2e-69 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 207 / 2e-68 ATARFB1C ADP-ribosylation factor B1C (.1) AT3G22950 198 / 3e-65 ATARFC1 ADP-ribosylation factor C1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G096900 [exp] 314 / 6e-111 AT1G10630 273 / 5e-95 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 286 / 6e-100 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 286 / 6e-100 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.014G116500 [exp] 286 / 6e-100 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G142100 [exp] 284 / 3e-99 AT1G10630 339 / 5e-121 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 284 / 4e-99 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 284 / 4e-99 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 283 / 1e-98 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 282 / 2e-98 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031436 [exp] 285 / 2e-99 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10030884 [exp] 285 / 3e-99 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 285 / 8e-99 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 285 / 4e-98 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 286 / 9e-96 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10002817 [exp] 271 / 3e-94 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10030605 [exp] 284 / 1e-89 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10027870 [exp] 249 / 2e-85 AT1G10630 241 / 2e-82 ADP-ribosylation factor A1F (.1) Lus10013020 [exp] 229 / 5e-75 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10009571 [exp] 218 / 4e-73 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF09439 [poplar] [flax] SRPRB Signal recognition particle receptor beta subunit
Representative CDS sequence Show only first row Show all	>Potri.001G301200.1 pacid=42791646 polypeptide=Potri.001G301200.1.p locus=Potri.001G301200 ID=Potri.001G301200.1.v4.1 annot-version=v4.1 ATGGGCGCAATCATATCCCGATTTGCGAGAAGGTTCCTTCCTAAGACTGAAGTTAGGATTCTCATGGTGGGGCTTGATGCATCTGGGAAAACAACAATTC TGTACAAGCTGAAGCTGGGAGAAATTGTTCTAACGGTACCGACGATTGGTTTTAATGTGGAGACAGTGGTGTACAAAAATATAAGTTTCACCGTATGGGA TGTAGGAGGACAACAAAAGATTCGGCATCTATGGAGACACTACTTTCAGAGTGCCCATGGACTCATCTTTGTCGTGGACAGCAATGATAGGAGGAGAATT TTGGAAGCACGAAATGAGCTACATTGCATTTTATCTCATATCGAACTAAAGGATGCAATACTGCTTGTCTTTGCTAACAAGCAGGATGTCCCAGATGCTA TGCCTGTTTCTGAGGTTGCTGATAAGCTTGGACTACCTACTCTTAAACAGCGTCACTGGTACATTCAAAGCTCTTCTGCGACATCGGGACGTGGACTTTA TGAAGGTCTAGACTGGCTATCTAACAACATCTCTAACAAGGCAGCATAA
AA sequence Show only first row Show all	>Potri.001G301200.1 pacid=42791646 polypeptide=Potri.001G301200.1.p locus=Potri.001G301200 ID=Potri.001G301200.1.v4.1 annot-version=v4.1 MGAIISRFARRFLPKTEVRILMVGLDASGKTTILYKLKLGEIVLTVPTIGFNVETVVYKNISFTVWDVGGQQKIRHLWRHYFQSAHGLIFVVDSNDRRRI LEARNELHCILSHIELKDAILLVFANKQDVPDAMPVSEVADKLGLPTLKQRHWYIQSSSATSGRGLYEGLDWLSNNISNKAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62290		ATARFA1E	ADP-ribosylation factor A1E (....		Potri.001G301200 [exp]	0	1
AT4G05050		UBQ11	ubiquitin 11 (.1.2.3.4)		Potri.006G045300 [exp]	1.41	0.9781
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.001G396100 [exp]	4.69	0.9560
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Potri.002G014900 [exp]	4.89	0.9680
AT3G07510			unknown protein		Potri.014G176300 [exp]	5.09	0.9545
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G142100 [exp]	6.16	0.9477	Pt-ARF1.5
AT3G27030			unknown protein		Potri.001G328800 [exp]	8.36	0.9294
					Potri.011G102400 [exp]	10.95	0.9591
AT2G21080			unknown protein		Potri.018G002700 [exp]	11.53	0.9622
AT1G32250			Calcium-binding EF-hand family...		Potri.014G030200 [exp]	11.74	0.9667
AT4G05430			Carbohydrate-binding X8 domain...		Potri.019G007800 [exp]	12.24	0.9671

Compare expression of checked genes

Potri.001G301200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.