Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 165 / 7e-47 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 139 / 5e-37 Leucine-rich repeat (LRR) family protein (.1) AT3G56370 93 / 3e-20 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 88 / 2e-18 EFR EF-TU receptor (.1) AT1G80080 84 / 2e-17 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT3G05360 84 / 3e-17 AtRLP30 receptor like protein 30 (.1) AT4G20940 84 / 4e-17 Leucine-rich receptor-like protein kinase family protein (.1) AT4G30520 82 / 7e-17 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT1G73066 82 / 1e-16 Leucine-rich repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G097100 [exp] 556 / 0 AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.005G234400 [exp] 184 / 8e-54 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016800 [exp] 171 / 4e-49 AT5G66330 480 / 8e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117800 [exp] 171 / 6e-49 AT5G66330 506 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 165 / 7e-47 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028400 [exp] 155 / 4e-43 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.004G065400 [exp] 97 / 2e-21 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G008375 [exp] 94 / 2e-20 AT4G08850 557 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.006G108600 [exp] 89 / 5e-19 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002822 [exp] 290 / 1e-95 AT2G15320 379 / 1e-130 Leucine-rich repeat (LRR) family protein (.1) Lus10007417 [exp] 157 / 7e-44 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10019356 [exp] 157 / 8e-44 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 152 / 8e-42 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10028359 [exp] 140 / 9e-38 AT5G66330 423 / 5e-147 Leucine-rich repeat (LRR) family protein (.1) Lus10025223 [exp] 94 / 2e-20 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 91 / 2e-19 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 87 / 5e-18 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10009394 [exp] 86 / 8e-18 AT3G47570 642 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10009476 [exp] 84 / 5e-17 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G301400.1 pacid=42790857 polypeptide=Potri.001G301400.1.p locus=Potri.001G301400 ID=Potri.001G301400.1.v4.1 annot-version=v4.1 ATGCTGCCTAGCATCCTTTCGTTCCTGCTTTCCTCCTTTATTCTCTTCAACACCGAAAATCTCGTTGCCGTGGCTCTCACTTCGCCACAAGACATCTCAG CTCTCAAAGCCTTCAAAGCCTCGGTCAAGCCAAGTTCAATCCAGCCATGGTCTTGCCTTGCTTCATGGGACTTCACCACCGACCCCTGTGCCTTCCCTCG TCGGACCCACTTCATTTGTGGCATCACCTGCTCCCCTGACTCAACTCGAGTCACCCAGCTCACTCTTGATCCAGCTGGCTACTCAGGCCAGCTCACCCCG CTCATCTCCCTACTCACTAGCCTCACCATCCTCGACCTCGTAGACAACAACTTCTATGGCCCTATCCCCTCCTCCATCTCCTCGCTTATCAACCTCCAAA CCTTGACCCTGAGTTCCAACTCGTTCTCTGGCGCAGTCCCTAACTCAATCACCAACCTTAAATCCCTCGAATCTTTAGACTTTTCACATAATTATTTATC TGGGTACCTCCCAAAAACCATGAATTCAATGTCAAGCTTAAGAAGACTTGATCTTAGCTACAATAAACTAACTGGGCCCTTACCAAAACTACCTTATAAC TTACTAGAACTGGCTTTGAAGGCCAATTCCTTGTCTGGCTCGTTATCAAAATCATCTTTTGACAGGTTAACTGGGTTAGAAGTTGTTGAACTCAGTGAAA ACTCGTTCACTGGCACATTAGAACCCTGGTTCTTTCTCTTACCTGCACTTCAACAGGTTGATTTAGCCAATAACAGCTTGACACGTGTCGGGATATCAAA GCCTAGTAATGCTAACAGTGACCTCGTTGCTGTTGATCTTGGGTTCAATAAAATCGAGGGGAATGCCCCCTTGCATTTTGCTGATTATCCACTGCTGTCT TCTTTGTCACTAAGGTACAACCGGTTACGCGGCACGATCCCATTGGAGTATAGTCGAAAGAAGAGTTTGAGAAGGCTGTTTCTCGATGGGAATTTCTTGA TTGGGAAGCCACCACCAGCTTTTTTCGCCGCCGACACGTCTGTTTCCGGTAGCCTAGGGGATAATTGTCTGCAAGCATGCCCAGGTTCGTTTCAGCTGTG CATGCCTACACAGAAGCCAAGTTCCGTATGCAAGCAAGCCTATGGTGGAAAACCAAGGTCTTAA
AA sequence Show only first row Show all	>Potri.001G301400.1 pacid=42790857 polypeptide=Potri.001G301400.1.p locus=Potri.001G301400 ID=Potri.001G301400.1.v4.1 annot-version=v4.1 MLPSILSFLLSSFILFNTENLVAVALTSPQDISALKAFKASVKPSSIQPWSCLASWDFTTDPCAFPRRTHFICGITCSPDSTRVTQLTLDPAGYSGQLTP LISLLTSLTILDLVDNNFYGPIPSSISSLINLQTLTLSSNSFSGAVPNSITNLKSLESLDFSHNYLSGYLPKTMNSMSSLRRLDLSYNKLTGPLPKLPYN LLELALKANSLSGSLSKSSFDRLTGLEVVELSENSFTGTLEPWFFLLPALQQVDLANNSLTRVGISKPSNANSDLVAVDLGFNKIEGNAPLHFADYPLLS SLSLRYNRLRGTIPLEYSRKKSLRRLFLDGNFLIGKPPPAFFAADTSVSGSLGDNCLQACPGSFQLCMPTQKPSSVCKQAYGGKPRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15320			Leucine-rich repeat (LRR) fami...		Potri.001G301400 [exp]	0	1
AT3G19300			Protein kinase superfamily pro...		Potri.009G100400 [exp]	4.79	0.7241
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.010G078400 [exp]	9.48	0.6528
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Potri.003G126500 [exp]	19.28	0.6641
AT1G04280			P-loop containing nucleoside t...		Potri.008G162400 [exp]	22.71	0.7075
AT1G15080		ATLPP2, LPP2, A...	PHOSPHATIDIC ACID PHOSPHATASE ...		Potri.010G119300 [exp]	24.49	0.6717	Pt-PAP2.2
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Potri.005G083300 [exp]	24.53	0.6627
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.014G070000 [exp]	27.56	0.6833
AT2G35350		PLL1	poltergeist like 1 (.1)		Potri.001G144700 [exp]	35.91	0.6275
AT5G57100			Nucleotide/sugar transporter f...		Potri.006G072500 [exp]	41.80	0.6380
AT3G63380			ATPase E1-E2 type family prote...		Potri.016G009300 [exp]	45.29	0.6413

Compare expression of checked genes

Potri.001G301400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.