Plant FIBer expression Database

Potri.001G301501 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35220 397 / 4e-141 Cyclase family protein (.1)
AT1G44542 343 / 2e-119 Cyclase family protein (.1)
AT4G34180 337 / 1e-117 Cyclase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G301600
[exp]
416 / 3e-148 AT4G35220 363 / 1e-127 Cyclase family protein (.1)
Potri.001G301700
[exp]
398 / 4e-141 AT4G35220 348 / 1e-121 Cyclase family protein (.1)
Potri.009G097300
[exp]
337 / 3e-117 AT4G35220 343 / 6e-120 Cyclase family protein (.1)
Potri.009G097201
[exp]
323 / 6e-113 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019822
[exp]
421 / 2e-150 AT4G35220 396 / 1e-140 Cyclase family protein (.1)
Lus10014092
[exp]
397 / 7e-138 AT4G35220 366 / 3e-125 Cyclase family protein (.1)
Lus10014091
[exp]
333 / 4e-116 AT1G44542 333 / 3e-116 Cyclase family protein (.1)
Lus10027872
[exp]
304 / 3e-105 AT4G35220 310 / 8e-108 Cyclase family protein (.1)
Lus10001508
[exp]
279 / 4e-94 AT4G34180 281 / 2e-95 Cyclase family protein (.1)
Lus10031454
[exp]
270 / 7e-91 AT4G34180 274 / 1e-92 Cyclase family protein (.1)
Lus10031453
[exp]
266 / 4e-89 AT4G34180 278 / 4e-94 Cyclase family protein (.1)
Lus10001509
[exp]
256 / 2e-85 AT4G34180 268 / 8e-91 Cyclase family protein (.1)
Lus10019823
[exp]
105 / 6e-29 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0364 Leu-IlvD PF04199 Cyclase Putative cyclase
Representative CDS sequence
>Potri.001G301501.1 pacid=42790509 polypeptide=Potri.001G301501.1.p locus=Potri.001G301501 ID=Potri.001G301501.1.v4.1 annot-version=v4.1
ATGTCCACCACCAAAACCATGATCCCTCTCCTCCTCCTCCTCCTCCTCTCTCCCCTCTCCACCACCGCTTCTACCGCCGCCTACCCCACAATCCCGGGCA
CCATAGACACCTCAGTCTCCTCCTCCCAACCCGACAACCTGATTCCAATCCGCAACGAAATCTACGGCAATGGTAAAATCTTTGACATAAGTCACAGATA
CATAAACGATATGCCGGTTTGGGACTCTAAAGACGGGTTGGGAAAGTTCCTGTCTTTACCAGCAAGCATGAAAAATGGGTCTCTCGCTAACAACTCAGAA
ATGAAGTTACCTACTCATACTGGCACGCATGTTGACTCACCTGGACATGTTTTTGATCATTACTTTGATTCTGGGTTCGATGTTGATACTCTTGATCTTG
AAGTCCTTAATGGTCCTGCTTTGCTAGTGGATGTTCCAAGGCATTCCAATATAACTGCTGAAGTTATGAAGTCCTTACACATTCCAAAGGGAGTGCGTCG
CGTGCTTTTCAGAACACTAAACACTGACAGGCGGCTTATGTTCAAAAGGGAGTTTGATAGAAGTTATGTGGGGTTCACGAAGGATGGTGCAAAATGGTTG
GTAGACAACACTGACATCAAGCTTGTTGGAATTGATTACCTATCTGTTGCTGCCTGGAGTGATTTGATTCCATCTCATCTTGTCTTTCTAGAAGGCAGGG
AAATCATCCTTGTGGAGGCTTTAAAACTGGATGACATCCAACCTGGAGTATATTCTGTCCATTGTTTACCCCTGAGGTTGTTTGGCGCCGAGGGATCTCC
AATAAGATGCGTTCTCATCAAATGA
AA sequence
>Potri.001G301501.1 pacid=42790509 polypeptide=Potri.001G301501.1.p locus=Potri.001G301501 ID=Potri.001G301501.1.v4.1 annot-version=v4.1
MSTTKTMIPLLLLLLLSPLSTTASTAAYPTIPGTIDTSVSSSQPDNLIPIRNEIYGNGKIFDISHRYINDMPVWDSKDGLGKFLSLPASMKNGSLANNSE
MKLPTHTGTHVDSPGHVFDHYFDSGFDVDTLDLEVLNGPALLVDVPRHSNITAEVMKSLHIPKGVRRVLFRTLNTDRRLMFKREFDRSYVGFTKDGAKWL
VDNTDIKLVGIDYLSVAAWSDLIPSHLVFLEGREIILVEALKLDDIQPGVYSVHCLPLRLFGAEGSPIRCVLIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35220 Cyclase family protein (.1) Potri.001G301501
[exp]
0 1
AT3G03980 NAD(P)-binding Rossmann-fold s... Potri.013G059100
[exp]
1.00 0.9255
AT3G02910 AIG2-like (avirulence induced ... Potri.019G041100
[exp]
5.19 0.8880
Potri.004G178101
[exp]
6.16 0.8897
AT4G29260 HAD superfamily, subfamily III... Potri.006G152900
[exp]
6.63 0.8720
AT1G77210 AtSTP14 sugar transport protein 14, su... Potri.018G085200
[exp]
8.83 0.8589 RCSTG.1
AT1G12550 HPR3 hydroxypyruvate reductase 3, D... Potri.001G113250
[exp]
10.77 0.8876
AT3G46870 Pentatricopeptide repeat (PPR)... Potri.009G038200
[exp]
11.66 0.8679
AT2G28930 APK1B protein kinase 1B (.1.2.3) Potri.010G203400
[exp]
11.74 0.8604
AT3G16910 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-... Potri.008G108000
[exp]
15.58 0.8566
AT3G59380 FTA, PLP, ATFTA... PLURIPETALA, farnesyltransfera... Potri.007G127500
[exp]
17.17 0.8411 FTA.1

Potri.001G301501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.