Plant FIBer expression Database

Potri.001G301600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35220 363 / 1e-127 Cyclase family protein (.1)
AT4G34180 336 / 3e-117 Cyclase family protein (.1)
AT1G44542 334 / 5e-116 Cyclase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G301700
[exp]
443 / 5e-159 AT4G35220 348 / 1e-121 Cyclase family protein (.1)
Potri.001G301501
[exp]
417 / 6e-149 AT4G35220 397 / 4e-141 Cyclase family protein (.1)
Potri.009G097201
[exp]
362 / 2e-128 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
Potri.009G097300
[exp]
323 / 5e-112 AT4G35220 343 / 6e-120 Cyclase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019822
[exp]
390 / 2e-138 AT4G35220 396 / 1e-140 Cyclase family protein (.1)
Lus10014092
[exp]
372 / 1e-127 AT4G35220 366 / 3e-125 Cyclase family protein (.1)
Lus10014091
[exp]
328 / 3e-114 AT1G44542 333 / 3e-116 Cyclase family protein (.1)
Lus10027872
[exp]
298 / 7e-103 AT4G35220 310 / 8e-108 Cyclase family protein (.1)
Lus10001508
[exp]
276 / 4e-93 AT4G34180 281 / 2e-95 Cyclase family protein (.1)
Lus10031454
[exp]
274 / 3e-92 AT4G34180 274 / 1e-92 Cyclase family protein (.1)
Lus10031453
[exp]
271 / 4e-91 AT4G34180 278 / 4e-94 Cyclase family protein (.1)
Lus10001509
[exp]
265 / 7e-89 AT4G34180 268 / 8e-91 Cyclase family protein (.1)
Lus10019823
[exp]
104 / 2e-28 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0364 Leu-IlvD PF04199 Cyclase Putative cyclase
Representative CDS sequence
>Potri.001G301600.2 pacid=42790844 polypeptide=Potri.001G301600.2.p locus=Potri.001G301600 ID=Potri.001G301600.2.v4.1 annot-version=v4.1
ATGGCATCCCTCCTCTTGTTACTGCTCCTGTCTCCCCTCTCCACCACCGCAGCCTCCAGCGGCGCTTACCCCACCATCCCTGGCAGCATAGACACCTCTT
TCCCCGCTTCACAAGACAGCAAACTTATCCCAATCAGGCGTGAGGTGTATGGTGATGGGAGAATATTTGACATAACCCACAGGTACACAAGCGACATGCC
GTCCATGGGATCAGAAAATGGGCTGGGTCAGTTCCTGAGGCTCCCTGAAAGCATGAAGAATGGGTCCTTCGCCAACATATCGGAGATGAAGTTGATCACT
CATACTGGCACACACGTCGATGCACCTGGACATTACTATGATCATTACTTCGATGCTGGGTTTGATGTGGACACTCTTGACCTTGAAGTACTTAATGGTC
CTGGACTATTAATTGATGTTCCAAGGGGGACGAACATAACTGCTGAAGTTATGAAGTCCTTACATATTCCCAAAGGAGCTCGACGTGTTCTTTTCAGGAC
AGAAAATACCGACAGGCGACTTATGTTCAAAAATCAGATCGATACAAGCTTTGTGGGATTTACAACGGATGGAGCAAAATGGTTGGTAGACAACACTGAC
ATTAAGCTTGTTGGAATTGATTACTTAGCTGTTGCTGCTTGGAGTGATTTGGTTCCAGCTCATCTTGTCCTTTTGGAAAGCAGGGAAATCATCATTGTGG
AAGGCCTAAAACTCGATGACATCCAACCTGGTGTGTATTCTATCCATTGTTTGCCTATAAGATTGCTCGGTGCTGAAGGATCACCAACGCGATGCATTCT
CATCAAATGA
AA sequence
>Potri.001G301600.2 pacid=42790844 polypeptide=Potri.001G301600.2.p locus=Potri.001G301600 ID=Potri.001G301600.2.v4.1 annot-version=v4.1
MASLLLLLLLSPLSTTAASSGAYPTIPGSIDTSFPASQDSKLIPIRREVYGDGRIFDITHRYTSDMPSMGSENGLGQFLRLPESMKNGSFANISEMKLIT
HTGTHVDAPGHYYDHYFDAGFDVDTLDLEVLNGPGLLIDVPRGTNITAEVMKSLHIPKGARRVLFRTENTDRRLMFKNQIDTSFVGFTTDGAKWLVDNTD
IKLVGIDYLAVAAWSDLVPAHLVLLESREIIIVEGLKLDDIQPGVYSIHCLPIRLLGAEGSPTRCILIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35220 Cyclase family protein (.1) Potri.001G301600
[exp]
0 1
AT2G04360 unknown protein Potri.014G169200
[exp]
5.29 0.9612
AT3G15353 ATMT3, MT3 metallothionein 3 (.1.2) Potri.001G400100
[exp]
9.48 0.9431
AT5G63520 unknown protein Potri.011G010200
[exp]
14.69 0.9472
AT5G57170 Tautomerase/MIF superfamily pr... Potri.006G075100
[exp]
18.65 0.9463
AT3G04550 unknown protein Potri.013G044900
[exp]
22.53 0.9457
AT2G41120 unknown protein Potri.006G025200
[exp]
25.19 0.9447
AT2G01590 CRR3 chlororespiratory reduction 3 ... Potri.010G110100
[exp]
29.51 0.9422
AT1G02560 NCLPP5, NCLPP1,... NUCLEAR CLPP 5, NUCLEAR-ENCODE... Potri.014G119700
[exp]
31.52 0.9442
AT3G62410 CP12-2 CP12 DOMAIN-CONTAINING PROTEIN... Potri.002G196100
[exp]
34.38 0.9447
AT3G20230 Ribosomal L18p/L5e family prot... Potri.013G108700
[exp]
38.06 0.9432

Potri.001G301600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.