Plant FIBer expression Database

Potri.001G301700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35220 348 / 8e-122 Cyclase family protein (.1)
AT4G34180 328 / 6e-114 Cyclase family protein (.1)
AT1G44542 326 / 7e-113 Cyclase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G301600
[exp]
451 / 5e-162 AT4G35220 363 / 1e-127 Cyclase family protein (.1)
Potri.001G301501
[exp]
406 / 2e-144 AT4G35220 397 / 4e-141 Cyclase family protein (.1)
Potri.009G097201
[exp]
347 / 2e-122 AT4G35220 291 / 1e-100 Cyclase family protein (.1)
Potri.009G097300
[exp]
323 / 3e-112 AT4G35220 343 / 6e-120 Cyclase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019822
[exp]
382 / 1e-134 AT4G35220 396 / 1e-140 Cyclase family protein (.1)
Lus10014092
[exp]
362 / 6e-124 AT4G35220 366 / 3e-125 Cyclase family protein (.1)
Lus10014091
[exp]
322 / 1e-111 AT1G44542 333 / 3e-116 Cyclase family protein (.1)
Lus10027872
[exp]
293 / 8e-101 AT4G35220 310 / 8e-108 Cyclase family protein (.1)
Lus10001508
[exp]
273 / 6e-92 AT4G34180 281 / 2e-95 Cyclase family protein (.1)
Lus10031453
[exp]
273 / 9e-92 AT4G34180 278 / 4e-94 Cyclase family protein (.1)
Lus10031454
[exp]
270 / 2e-90 AT4G34180 274 / 1e-92 Cyclase family protein (.1)
Lus10001509
[exp]
266 / 2e-89 AT4G34180 268 / 8e-91 Cyclase family protein (.1)
Lus10019823
[exp]
98 / 7e-26 AT4G35220 110 / 2e-31 Cyclase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0364 Leu-IlvD PF04199 Cyclase Putative cyclase
Representative CDS sequence
>Potri.001G301700.1 pacid=42788624 polypeptide=Potri.001G301700.1.p locus=Potri.001G301700 ID=Potri.001G301700.1.v4.1 annot-version=v4.1
ATGGTCAGAGCCAAAGGCATGACGCCTTTCCTCTTGCTACTCCTCATCTCTCCCTTCTCTACCACCACCGCCTCCAACACTGCCTGCCCCACCAATATTC
CCGACACCACAGACACCTGCATCTCCTCTTCACAAGAAAACAAACTTGTCCCAATTAGACGTGAAGTCTATGGTGATGGTAGAATCTTTGATATTACTCA
TAGGTACACAGCCAACATGCCATCTTTCGGCTCCGAAAATGGACTGGGCCAGTTCTTGCAGTTCCCTGAAAAAATTAAGAATGGGTCCATGGTCAATGTA
TCTGAGATGAAGATGGTGACTCACACTGGCACACACGTTGATGCACCTGGGCATTTCTATGATCACTACTTCGATGCAGGGTTTGATGTGGACACTCTAG
ACTTGGAAGTGCTCAACGGTCCTGGGCTATTAATCGATGCTCCAAGGGGTACGAACATAACTGCTGAGGTCATGAAGAGCTTAAATATTCCGAAGGGAGT
TCGGCGTGTTCTTTTCAGAACAGACAATACTGATAGGCGACTTATGTTCAAAAATCAGTTCGACACGAGCTTTGTGGGATTTACTCAGGACGGGGCAAAA
TGGTTGGTAGAGAACACTGACATTAAGCTTATTGGAATTGATTACTTATCGGTTGCCGCTTGGAGTGATTTGGCTTCAGCTCATCTCGTCCTCTTGGAAA
GCAGAGAAATCATCATTGTGGAAAGCTTAAAACTTGATGACATACAACCTGGAATATATTCTATCCATTGTTTACCTCTAAGGTTGCTAGGTGCTGAAGC
TTCACCAATAAGATGCATTCTCATCAAATGA
AA sequence
>Potri.001G301700.1 pacid=42788624 polypeptide=Potri.001G301700.1.p locus=Potri.001G301700 ID=Potri.001G301700.1.v4.1 annot-version=v4.1
MVRAKGMTPFLLLLLISPFSTTTASNTACPTNIPDTTDTCISSSQENKLVPIRREVYGDGRIFDITHRYTANMPSFGSENGLGQFLQFPEKIKNGSMVNV
SEMKMVTHTGTHVDAPGHFYDHYFDAGFDVDTLDLEVLNGPGLLIDAPRGTNITAEVMKSLNIPKGVRRVLFRTDNTDRRLMFKNQFDTSFVGFTQDGAK
WLVENTDIKLIGIDYLSVAAWSDLASAHLVLLESREIIIVESLKLDDIQPGIYSIHCLPLRLLGAEASPIRCILIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35220 Cyclase family protein (.1) Potri.001G301700
[exp]
0 1
AT3G10720 Plant invertase/pectin methyle... Potri.008G011100
[exp]
1.00 0.9838
AT4G12480 PEARLI 1 1, PEA... EARLY ARABIDOPSIS ALUMINUM IND... Potri.001G122100
[exp]
1.41 0.9807
AT3G21420 LBO1 LATERAL BRANCHING OXIDOREDUCTA... Potri.010G201000
[exp]
1.73 0.9748
AT4G05200 CRK25 cysteine-rich RLK (RECEPTOR-li... Potri.011G028100
[exp]
4.24 0.9589
AT3G63520 ATNCED1, ATCCD1... carotenoid cleavage dioxygenas... Potri.018G042650
[exp]
4.47 0.9673
AT1G78830 Curculin-like (mannose-binding... Potri.011G066200
[exp]
5.09 0.9463
Potri.019G016110
[exp]
6.00 0.9632
AT5G45120 Eukaryotic aspartyl protease f... Potri.015G113100
[exp]
6.32 0.9344
AT2G45220 Plant invertase/pectin methyle... Potri.015G127700
[exp]
7.48 0.9618 Pt-PME.5
AT3G05220 Heavy metal transport/detoxifi... Potri.005G120200
[exp]
7.48 0.9594

Potri.001G301700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.