Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34150 204 / 8e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G55470 57 / 3e-10 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G63220 56 / 7e-10 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT3G07940 50 / 6e-07 Calcium-dependent ARF-type GTPase activating protein family (.1) AT5G47710 44 / 3e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G05500 44 / 5e-05 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G097900 [exp] 251 / 4e-84 AT4G34150 213 / 5e-69 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G123200 [exp] 202 / 6e-65 AT4G34150 185 / 3e-58 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G155600 [exp] 67 / 7e-14 AT1G63220 202 / 1e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G203000 [exp] 61 / 1e-11 AT3G55470 167 / 6e-54 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.003G198301 [exp] 50 / 3e-07 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.T125706 [exp] 50 / 3e-07 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.006G063900 [exp] 44 / 4e-05 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G056000 [exp] 44 / 5e-05 AT3G18370 971 / 0.0 C2 domain-containing protein (.1) Potri.018G025000 [exp] 43 / 0.0001 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027875 [exp] 239 / 2e-79 AT4G34150 246 / 3e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002825 [exp] 224 / 1e-73 AT4G34150 243 / 5e-81 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014088 [exp] 213 / 3e-68 AT4G34150 202 / 4e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10019826 [exp] 213 / 3e-68 AT4G34150 191 / 2e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10029565 [exp] 66 / 2e-13 AT1G63220 221 / 1e-75 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10002235 [exp] 66 / 2e-13 AT1G63220 216 / 2e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040291 [exp] 58 / 2e-10 AT3G55470 191 / 4e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10016347 [exp] 51 / 4e-07 AT3G07940 478 / 8e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10002760 [exp] 50 / 1e-06 AT3G07940 480 / 2e-164 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10024165 [exp] 48 / 4e-06 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G301900.1 pacid=42792157 polypeptide=Potri.001G301900.1.p locus=Potri.001G301900 ID=Potri.001G301900.1.v4.1 annot-version=v4.1 ATGTCGGTTTCTGGTATTCAAGGCCATCTTCTTGAAGTCACCGTTGTTGGGTGTACTAAATTGAAGGACACTGAATGGATTTCGAGACAAGATCCTTACG TTTGTGTTGAATATGGTAGCAATAAGTTTCGCACAAGAACCTGCACTGATGGAGGCAAAAATCCTACATTCCAAGAGAAGTTTATGTTTACACTAATTGA AGGGTTAAGAGAGATAGGTGTTGCTGTTTGGAACAGCAATACCCTAACTTTTGATGATTTTATCGGCAGCGGAAAGATTCAATTGCACAAGGTTCTATCG CAGGGTTTTGACGATACAACTTGGCCACTTCAATCTAAAACTGGAAGGTATGCTGGAGAAGTAAGATTGATAATACACTATGCAAATGCCAATAAAGCAG CAGCAGGCTATGCTCCTTCAGCACCACAATATGGAGCCCCTGTTCCTCAAGTCTCATATTACTCTGCACCACCACCAGCGCATGGAGCTCCTTATGGACA ACCATCGACAGCATACACAGGCTCATCTCCTTATCCATCATACCCTCCTAGTTCAGCTTATCCACCATCAGCGTATCCCCCACCACCAGCTGCAACTTAT CCTCCTGCACCGTATCCGGCAACTTCAGCATATCCTCCACAACCATATCCACCTCCACCTCAAGCTTCACCCTACTATCCTCCAGGCCCGTTTCCTGGAA TCTATCCTCCACCACCGTACTAA
AA sequence Show only first row Show all	>Potri.001G301900.1 pacid=42792157 polypeptide=Potri.001G301900.1.p locus=Potri.001G301900 ID=Potri.001G301900.1.v4.1 annot-version=v4.1 MSVSGIQGHLLEVTVVGCTKLKDTEWISRQDPYVCVEYGSNKFRTRTCTDGGKNPTFQEKFMFTLIEGLREIGVAVWNSNTLTFDDFIGSGKIQLHKVLS QGFDDTTWPLQSKTGRYAGEVRLIIHYANANKAAAGYAPSAPQYGAPVPQVSYYSAPPPAHGAPYGQPSTAYTGSSPYPSYPPSSAYPPSAYPPPPAATY PPAPYPATSAYPPQPYPPPPQASPYYPPGPFPGIYPPPPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34150			Calcium-dependent lipid-bindin...		Potri.001G301900 [exp]	0	1
AT3G10300			Calcium-binding EF-hand family...		Potri.016G043600 [exp]	1.41	0.8977
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Potri.002G256200 [exp]	2.64	0.8533
AT2G30020			Protein phosphatase 2C family ...		Potri.009G073000 [exp]	7.93	0.8458	Pt-MP2.9
AT3G48080			alpha/beta-Hydrolases superfam...		Potri.012G074700 [exp]	8.83	0.8616	Pt-EDS1.3
AT1G75388		CPuORF5	conserved peptide upstream ope...		Potri.007G020000 [exp]	11.66	0.8114
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Potri.018G086900 [exp]	14.49	0.8451
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.005G057800 [exp]	14.83	0.8586
					Potri.003G102000 [exp]	16.00	0.8474
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.005G032600 [exp]	16.37	0.8590
AT3G14470			NB-ARC domain-containing disea...		Potri.009G056200 [exp]	22.04	0.8284

Compare expression of checked genes

Potri.001G301900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.