Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19420 849 / 0 PTEN2A, ATPEN2 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) AT3G50110 636 / 0 PTEN2B, ATPEN3 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1) AT5G39400 167 / 1e-45 ATPTEN1 Phosphatase and TENsin homolog deleted on chromosome ten 1, Calcium/lipid-binding (CaLB) phosphatase (.1) AT5G07740 51 / 3e-06 actin binding (.1) AT1G31810 47 / 4e-05 AFH14 Formin Homology 14 (.1) AT2G25050 47 / 4e-05 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098000 [exp] 1090 / 0 AT3G19420 811 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.007G047900 [exp] 757 / 0 AT3G19420 702 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.017G089700 [exp] 163 / 5e-44 AT5G39400 555 / 0.0 Phosphatase and TENsin homolog deleted on chromosome ten 1, Calcium/lipid-binding (CaLB) phosphatase (.1) Potri.012G067900 [exp] 51 / 2e-06 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 49 / 1e-05 AT5G07740 722 / 0.0 actin binding (.1) Potri.018G108000 [exp] 47 / 3e-05 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G185501 [exp] 45 / 0.0002 AT5G58160 598 / 0.0 actin binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027876 [exp] 865 / 0 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10002826 [exp] 855 / 0 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10010265 [exp] 538 / 0 AT3G19420 555 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10010266 [exp] 153 / 1e-42 AT3G50110 149 / 5e-42 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1) Lus10035830 [exp] 49 / 9e-06 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 48 / 2e-05 AT5G58160 608 / 0.0 actin binding (.1) Lus10003482 [exp] 47 / 8e-05 AT5G07740 714 / 0.0 actin binding (.1) Lus10015724 [exp] 45 / 0.0002 AT5G07740 723 / 0.0 actin binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G302000.2 pacid=42790890 polypeptide=Potri.001G302000.2.p locus=Potri.001G302000 ID=Potri.001G302000.2.v4.1 annot-version=v4.1 ATGGATTCTGAATCTGCTGATACACCACCTCCATCTGTTAAAGCTCCTGATACACAACCTCCTCCTCCTGCTGCTGCTGCTGCTGATCCCGTGCCTGAGA ATCCTGCAAGTGATGCGCCATCAAAACTCTCTGCAGCTGGCATAACGTCATGGGCCAAAAGTTTAAAAATCCCCCAGCCATTGACTTCCTCGCCAGATGA CTCACCAACTGGCAACGCTGGAAAATCAACCTTTGCACGTTTTACTAGTGGATTTGGACTGCGCTTGTCTCCAAAATCTCCTGCAGCAGATGATAGTCCT GAAGGAACTTCAGCAACTTCACAATCTGGCTTATTTGGAACAATCACTAAAGGGTTAGTTGATACATCTAAGAATGCAGTGAAGGCAGTGCAGGTCAAAG CTCGGCATGCTGTCTCTCAAAATAAGCGAAGATATCAGGAAGGAGGTTTTGATTTGGATATGACATATATCACAGAGAATATAATTGCCATGGGGTTTCC TGCTGGTGATATGAGTTCTGGTTTTTTTGGATATGTCGAGGGATTCTATAGAAACCACATGGAAGAAGTGATCAAGTTTTTTGAAACCCATCACAAGGAC AAGTATAAAGTGTACAATCTTTGTTGTGAAAGGCTGTATGATGCATCATTGTTTGAAGGAAAGGTGGCTAGTTTTCCATTTGATGACCACAATTGCCCCC CAATTCAGCTAATAACATCATTCTGTCAAAGTGCTTACTTGTGGTTGAAGGAGGATATTGAGAATGTCGTGGTTGTGCACTGTAAGGCTGGGATGGCACG GACAGGGCTGATGATTTCTAGCCTTCTTCTTTACTTAAAGTTTTTCCCTACTGCGGAGGAGTCTATTGACTACTACAACCAGAAGAGGTGTTTTGATGCA AAAGGGCTTGTTCTGCCCAGTCAAATTAGATATGTAAAATATTTTGAGCGTATCTTAACATACTTCAATGGAGAAAACCAGCCTGGGCGTAGGTGCATGC TCAGGGGATTTCGGCTTCACAGGTGCCCTTATTGGATCAGGCCGTCAATTACCATCTCTGATCATAATGGTGTTCTCTTCTCCTCAAAAAAGCATCCCAG AACCAAGGATTTGTCGCCAGAAGAATACTGGTTTAGTGCTCCCAAGAAAGGGGTTATGGTCTTTGCTTTGCCAGGGGAGCCTGGTCTGACGGAGGTGGCT GGAGACTTCAAAGTTCATTTTCATGACCGCCAAGGGGATTTTTACTTTTGGTTGAACACGCAGTTTATGGAGAACAGAAAAATCTTGAACACCAGTGATA TTGATGGGTTTGATAAGAGGAAACTGCCTTCCCCAGGATTTCAGGTTGAGGTCGTGCTAGTAGATTATGATGGCACTGTTTCAACCAGGTCAAATATTGA AACTGCTGTGAAGAAATCAGATGAAGGTTCAAGTACTGCTCCTGCATCAGTTGATGCAGGTACAACTGCACCAAACCAAAATAAAGACTCAGCAAGTAAT GATAAAGATGATGTGTTCTCGGATAGTGAGGCAGAGGAATCAGTATCTTCCAAACAAAAGCAGGCTCAAGCATCCTCTGCAGGGGGTGAAACAGCTGCCA CACCTGCCCCTAGTTCTGGAACTGATAACAAAACAGAAAAAGTCGCCAGTTTAACCCAAGCAACTGAACAGTTTTCTCTGGGAAACACGGGCTCCCAGCA GTCGCATGCCCCTGCTCAGCCTAAAATTGAAGCCGTGGGTGGAACTGTCTCAAGCCTTGAGGCTAACAACGCCCAAAGTGAATTCAAGGCAATGGCTGCT GATGCATCTGTTTTTACCTTTGGAGATGATGAAGACTACGAAAGTGAGTGA
AA sequence Show only first row Show all	>Potri.001G302000.2 pacid=42790890 polypeptide=Potri.001G302000.2.p locus=Potri.001G302000 ID=Potri.001G302000.2.v4.1 annot-version=v4.1 MDSESADTPPPSVKAPDTQPPPPAAAAADPVPENPASDAPSKLSAAGITSWAKSLKIPQPLTSSPDDSPTGNAGKSTFARFTSGFGLRLSPKSPAADDSP EGTSATSQSGLFGTITKGLVDTSKNAVKAVQVKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKD KYKVYNLCCERLYDASLFEGKVASFPFDDHNCPPIQLITSFCQSAYLWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCFDA KGLVLPSQIRYVKYFERILTYFNGENQPGRRCMLRGFRLHRCPYWIRPSITISDHNGVLFSSKKHPRTKDLSPEEYWFSAPKKGVMVFALPGEPGLTEVA GDFKVHFHDRQGDFYFWLNTQFMENRKILNTSDIDGFDKRKLPSPGFQVEVVLVDYDGTVSTRSNIETAVKKSDEGSSTAPASVDAGTTAPNQNKDSASN DKDDVFSDSEAEESVSSKQKQAQASSAGGETAATPAPSSGTDNKTEKVASLTQATEQFSLGNTGSQQSHAPAQPKIEAVGGTVSSLEANNAQSEFKAMAA DASVFTFGDDEDYESE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.001G302000 [exp]	0	1
AT5G47530			Auxin-responsive family protei...		Potri.006G015000 [exp]	2.82	0.7215
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.008G017800 [exp]	3.74	0.6941
AT5G61280			Remorin family protein (.1)		Potri.015G049700 [exp]	6.32	0.7279
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Potri.011G007100 [exp]	6.48	0.7278
AT4G25250			Plant invertase/pectin methyle...		Potri.015G128500 [exp]	9.43	0.7774
AT2G42490			Copper amine oxidase family pr...		Potri.010G045600 [exp]	12.64	0.6854
AT1G06050			Protein of unknown function (D...		Potri.017G027700 [exp]	16.88	0.6791
AT1G73760			RING/U-box superfamily protein...		Potri.015G043900 [exp]	23.64	0.6950
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Potri.016G118000 [exp]	24.37	0.6795
AT2G23770			protein kinase family protein ...		Potri.005G128200 [exp]	26.83	0.7206

Compare expression of checked genes

Potri.001G302000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.