Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47128 600 / 0 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT5G43060 585 / 0 Granulin repeat cysteine protease family protein (.1) AT3G19390 571 / 0 Granulin repeat cysteine protease family protein (.1) AT4G36880 432 / 9e-150 CP1 cysteine proteinase1 (.1) AT3G19400 426 / 1e-147 Cysteine proteinases superfamily protein (.1.2) AT1G09850 411 / 1e-140 XBCP3 xylem bark cysteine peptidase 3 (.1) AT4G35350 379 / 2e-129 XCP1 xylem cysteine peptidase 1 (.1.2) AT1G20850 371 / 4e-126 XCP2 xylem cysteine peptidase 2 (.1) AT5G50260 365 / 5e-124 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 363 / 4e-123 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098100 [exp] 833 / 0 AT1G47128 607 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Potri.014G024100 [exp] 599 / 0 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1) Potri.007G047600 [exp] 469 / 2e-164 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.005G141600 [exp] 459 / 2e-160 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.005G232900 [exp] 408 / 1e-139 AT1G09850 594 / 0.0 xylem bark cysteine peptidase 3 (.1) Potri.004G207600 [exp] 388 / 7e-133 AT4G35350 543 / 0.0 xylem cysteine peptidase 1 (.1.2) Potri.005G256000 [exp] 379 / 2e-129 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.002G005700 [exp] 375 / 1e-127 AT1G20850 531 / 0.0 xylem cysteine peptidase 2 (.1) Potri.012G090900 [exp] 367 / 1e-124 AT5G50260 561 / 0.0 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014087 [exp] 664 / 0 AT5G43060 622 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10002827 [exp] 654 / 0 AT1G47128 609 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10027877 [exp] 642 / 0 AT5G43060 597 / 0.0 Granulin repeat cysteine protease family protein (.1) Lus10024801 [exp] 585 / 0 AT1G47128 633 / 0.0 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10019827 [exp] 547 / 0 AT5G43060 501 / 1e-177 Granulin repeat cysteine protease family protein (.1) Lus10018735 [exp] 447 / 9e-155 AT1G47128 491 / 3e-172 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) Lus10006130 [exp] 392 / 2e-133 AT1G09850 535 / 0.0 xylem bark cysteine peptidase 3 (.1) Lus10006542 [exp] 385 / 5e-132 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10026073 [exp] 380 / 7e-130 AT5G45890 393 / 5e-137 senescence-associated gene 12 (.1) Lus10003275 [exp] 380 / 7e-130 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00112 [poplar] [flax] Peptidase_C1 Papain family cysteine protease CL0125 [poplar] [flax] PF00396 [poplar] [flax] Granulin Granulin CL0125 [poplar] [flax] PF08246 [poplar] [flax] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Potri.001G302100.2 pacid=42788838 polypeptide=Potri.001G302100.2.p locus=Potri.001G302100 ID=Potri.001G302100.2.v4.1 annot-version=v4.1 ATGGCCTCTCTTCATCGATCTTTAGCCTTCATGGCTATGTTGTCCTTGCTTTCTGTTTGTTTAGCCATAGACATGTCCATAATTGATTACAACATAAAAC ATGGCCAAGTCCCAGAAAGAACAGAGGCAGAGACAAGAAGAATCTACGAGATGTGGTTGGTTAAACATGGTAGAGCATATAATGCGTTGGGTGAGAAAGA AAGACGATTTGAGATTTTCAAGGATAACCTTAAATTTATCGATGAACATAATTCTGTTGGGAACCCGAGTTATAAACTTGGGTTGAACAAGTTTGCGGAT TTGAGTAACGATGAGTACCGGTCGGTTTACTTGGGTACGAGGATGGATGGGAAGGGAAGGTTGTTAGGTGGGCCAAAAAGTGAGAGGTATTTGTTTAAGG AAGGTGATGATTTGCCGGAGACCGTTGATTGGAGAGAAAAGGGGGCTGTCGCCCCTGTTAAAGATCAAGGCCAGTGTGGGAGTTGCTGGGCATTCTCCAC TGTTGGAGCGGTGGAAGGGATAAACCAAATTGTAACTGGTAACTTGACATCTCTGTCAGAACAGGAGTTGGTGGATTGCGATAAGACATATAACCTGGGA TGCAATGGAGGTCTCATGGACTATGCCTTTGATTTTATTATTGAGAATGGTGGTATTGATACCGAAGAAGATTACCCCTACAAGGCTATTGATAGCATGT GTGATCCAAATAGGAAAAATGCTCGAGTTGTTACAATTGATGGTTATGAAGACGTTCCACAAAATGACGAGAAGTCATTAAAGAAGGCTGTGGCAAATCA ACCTGTTAGTGTTGCCATTGAAGCTGGTGGAAGGGGTTTCCAACTCTACCAATCTGGTGTTTTTACTGGGTCATGTGGAACACAGCTAGACCATGGTGTG GTTACTGTTGGGTATGGTACAGAGCATGGTGTAGATTACTGGATTGTGAGGAACTCATGGGGTCCTGCTTGGGGAGAGAATGGGTACATCAGGATGGAGC GTGATGTTGCCAGCACTGAAACTGGAAAGTGTGGAATAGCAATGGAAGCTTCATATCCCACCAAGAAGTCTGCAAATCCCCCTAATCCCGGTCCCTCCCC TCCATCTCCAGTGAACCCTCCACCTCCAGAAAAGCCTTCCTCAGAGTGCGATGATTACTACTCATGCCCTGCTGGAAGCACATGCTGCTGCATATATCAG TACGGTGACTATTGCTTTGGATGGGGGTGCTGCCCTCTGGAGTCTGCAACCTGCTGTGACGACCATTACAGCTGCTGCCCTCACGAGTATCCTGTCTGTG ACCTTGAAGCTGGAACCTGCCGAATGAGCAAGAGCAATCCATTTGGTGTTAAGATGTTGACTCGAGCTCCTGCTAGAATTACTCAGTCTCACCAGCTTGG TGGTAGGAGGCGAGCTGGTAGGAGGTTCAGCCCTGCTTGA
AA sequence Show only first row Show all	>Potri.001G302100.2 pacid=42788838 polypeptide=Potri.001G302100.2.p locus=Potri.001G302100 ID=Potri.001G302100.2.v4.1 annot-version=v4.1 MASLHRSLAFMAMLSLLSVCLAIDMSIIDYNIKHGQVPERTEAETRRIYEMWLVKHGRAYNALGEKERRFEIFKDNLKFIDEHNSVGNPSYKLGLNKFAD LSNDEYRSVYLGTRMDGKGRLLGGPKSERYLFKEGDDLPETVDWREKGAVAPVKDQGQCGSCWAFSTVGAVEGINQIVTGNLTSLSEQELVDCDKTYNLG CNGGLMDYAFDFIIENGGIDTEEDYPYKAIDSMCDPNRKNARVVTIDGYEDVPQNDEKSLKKAVANQPVSVAIEAGGRGFQLYQSGVFTGSCGTQLDHGV VTVGYGTEHGVDYWIVRNSWGPAWGENGYIRMERDVASTETGKCGIAMEASYPTKKSANPPNPGPSPPSPVNPPPPEKPSSECDDYYSCPAGSTCCCIYQ YGDYCFGWGCCPLESATCCDDHYSCCPHEYPVCDLEAGTCRMSKSNPFGVKMLTRAPARITQSHQLGGRRRAGRRFSPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.001G302100 [exp]	0	1
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.009G047300 [exp]	3.74	0.9087
AT1G27170			transmembrane receptors;ATP bi...		Potri.012G053200 [exp]	5.65	0.8997
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.008G006700 [exp]	5.74	0.8756	EMB101.3
AT5G17530			phosphoglucosamine mutase fami...		Potri.008G039200 [exp]	19.28	0.8733
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Potri.015G072100 [exp]	20.78	0.8801
AT2G32980			unknown protein		Potri.014G158000 [exp]	22.24	0.8908
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Potri.006G197900 [exp]	22.71	0.8838
AT1G09575			Protein of unknown function (D...		Potri.019G133400 [exp]	25.49	0.8248
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.012G107900 [exp]	25.51	0.8674
AT5G64180			unknown protein		Potri.015G005600 [exp]	26.92	0.8847

Compare expression of checked genes

Potri.001G302100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.