Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06744 410 / 6e-142 Leucine-rich repeat (LRR) family protein (.1) AT1G49750 346 / 3e-115 Leucine-rich repeat (LRR) family protein (.1) AT3G19320 342 / 6e-114 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 272 / 2e-86 Leucine-rich repeat (LRR) family protein (.1) AT4G28380 266 / 2e-85 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 268 / 8e-83 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 268 / 3e-82 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G33970 260 / 5e-80 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 248 / 4e-78 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 249 / 7e-78 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G098700 [exp] 672 / 0 AT4G06744 405 / 9e-140 Leucine-rich repeat (LRR) family protein (.1) Potri.014G024300 [exp] 482 / 2e-169 AT4G06744 449 / 6e-157 Leucine-rich repeat (LRR) family protein (.1) Potri.009G098601 [exp] 376 / 9e-127 AT3G19320 421 / 5e-143 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 273 / 6e-88 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.007G139200 [exp] 270 / 1e-86 AT4G28380 503 / 9e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 273 / 3e-86 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 273 / 5e-86 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 269 / 2e-83 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G152800 [exp] 259 / 2e-82 AT4G29240 472 / 3e-166 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010049 [exp] 409 / 3e-141 AT4G06744 442 / 2e-154 Leucine-rich repeat (LRR) family protein (.1) Lus10027878 [exp] 340 / 1e-112 AT3G19320 408 / 2e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10019830 [exp] 318 / 4e-106 AT1G49750 375 / 2e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10002828 [exp] 317 / 1e-105 AT3G19320 372 / 1e-126 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 288 / 2e-93 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 262 / 1e-83 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 266 / 5e-82 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 253 / 1e-80 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 242 / 3e-74 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10006611 [exp] 238 / 3e-74 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G302500.1 pacid=42788890 polypeptide=Potri.001G302500.1.p locus=Potri.001G302500 ID=Potri.001G302500.1.v4.1 annot-version=v4.1 ATGTATCAAATGGGAAGCATTTCTTTATGCAGCAAGAGCTTGTTGCACATCTCGATCCTATTCCTTCCATGTTTTATTGGCGTAACTTATTGCCAAAAGT TTCAAGGCCTATCTCCATTAATATCACCTCCATTGATTCCAGAAATCTTAAACTTCTTAGACCAAAGGCTTGCCTCAGTGTTTCCAATCATCCAAGTCTT CAAGGACACTATCACCTCTGATCCCTTTAACATCACTCAAACTTGGGTTGGCCCAGATATATGCAACTACAAAGGCTTCTACTGTACTAGTCCACCTGAT AATAACTCTGCCGTCGCCCTTGCTTCCATCGATTTCAATGGATTCCAGCTATCTGCCCCTACGCTTGATGGCTTCATTGATCAACTACCTGACCTTGCTC TCTTTCATGCCAACTCTAACAAATTTTCTGGTACCATATCACCAAAAATCACCAAGCTACCATTTCTTTATGAACTAGACATAAGCAACAATAATTTCCT TGGCAATTTTCCCATGGAGATTCTTGGAATCCCTGGCCTATCATTTTTAGATATCCGATTCAATTTCTTTACTGGAACAGTTCCTCCGGAAGTATTCACT CAAGGCCTTGACGTACTCTTCCTCAACAACAACAATTTTATTCAAAAACTCCCAGAAAACCTCGGCTCAACCACAGTGCTTTACCTCACCTTGGCTAACA ACAAATTTATCGGTCCAATCCCACGTAGCATCAGTAAAGCTTCCGCGACACTAAAGGAAGTGCTGTTCTTGAACAACTTACTTGCAGGTTGCCTCCCATA TGAACTAGGATTTCTTAGTGAACTAGTCCTTTTCGATGCTGGTAACAACTTACTAACCGGTCCTTTACCTTGCTCGTTGGGATGCTTGGCTAAGCTTGAA CAGTTCAACCTCACTGGGAACTTATTGTATGGACAGGTGCCAGAGGTGGTGTGCGCATTAGGGAAATTGGTGAACTTGTCACTCTCAAGTAATTATTTTA CAGAACTAGGGCCAACGTGTAGGAAACTAGTGAATAGTGGAGTTCTTGATATTAAAAAAAATTGTATACATGATCTCCCTGAACAGAGATCAGTGCTGGA GTGTGATGCTTTCTCCTTGCACCCTAGGTATTGCCCAAATCCTGCATCGTTTAACTTAATTCCTTGCAAGGTTCCATCCTCACCGAGTCATCCTTCGATT GGACCAAAGAGAAATTTGGTCAGTTATAGTGCTCTTCTGAGACATGCAGTTGATTTCCAGGAATAA
AA sequence Show only first row Show all	>Potri.001G302500.1 pacid=42788890 polypeptide=Potri.001G302500.1.p locus=Potri.001G302500 ID=Potri.001G302500.1.v4.1 annot-version=v4.1 MYQMGSISLCSKSLLHISILFLPCFIGVTYCQKFQGLSPLISPPLIPEILNFLDQRLASVFPIIQVFKDTITSDPFNITQTWVGPDICNYKGFYCTSPPD NNSAVALASIDFNGFQLSAPTLDGFIDQLPDLALFHANSNKFSGTISPKITKLPFLYELDISNNNFLGNFPMEILGIPGLSFLDIRFNFFTGTVPPEVFT QGLDVLFLNNNNFIQKLPENLGSTTVLYLTLANNKFIGPIPRSISKASATLKEVLFLNNLLAGCLPYELGFLSELVLFDAGNNLLTGPLPCSLGCLAKLE QFNLTGNLLYGQVPEVVCALGKLVNLSLSSNYFTELGPTCRKLVNSGVLDIKKNCIHDLPEQRSVLECDAFSLHPRYCPNPASFNLIPCKVPSSPSHPSI GPKRNLVSYSALLRHAVDFQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G06744			Leucine-rich repeat (LRR) fami...		Potri.001G302500 [exp]	0	1
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G046400 [exp]	1.41	0.9829
					Potri.001G045301 [exp]	3.16	0.9806
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037600 [exp]	5.65	0.9773
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045600 [exp]	6.00	0.9794
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Potri.006G214500 [exp]	10.90	0.9684
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Potri.009G142000 [exp]	11.13	0.9579
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G046100 [exp]	11.83	0.9749
AT3G20340			unknown protein		Potri.011G003100 [exp]	15.16	0.9648
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.011G037300 [exp]	15.29	0.9684
					Potri.006G038300 [exp]	18.49	0.9717

Compare expression of checked genes

Potri.001G302500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.