Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15490 414 / 9e-142 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G15480 412 / 1e-140 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT4G34135 406 / 2e-138 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2) AT4G34131 405 / 3e-138 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34138 388 / 2e-131 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36780 309 / 2e-100 UDP-Glycosyltransferase superfamily protein (.1) AT2G36770 303 / 3e-98 UDP-Glycosyltransferase superfamily protein (.1) AT3G53160 302 / 7e-98 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G36760 298 / 4e-96 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36800 296 / 3e-95 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G303700 [exp] 734 / 0 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 730 / 0 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G098966 [exp] 553 / 0 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 549 / 0 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 545 / 0 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 509 / 5e-179 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302400 [exp] 448 / 6e-155 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098400 [exp] 443 / 9e-153 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302300 [exp] 422 / 1e-144 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014079 [exp] 412 / 1e-140 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10019835 [exp] 404 / 2e-137 AT2G15480 476 / 3e-165 UDP-glucosyl transferase 73B5 (.1.2) Lus10019833 [exp] 394 / 4e-134 AT2G15480 483 / 2e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014082 [exp] 388 / 1e-131 AT2G15480 483 / 3e-168 UDP-glucosyl transferase 73B5 (.1.2) Lus10014083 [exp] 389 / 3e-131 AT4G34131 489 / 2e-170 UDP-glucosyl transferase 73B3 (.1) Lus10019832 [exp] 386 / 2e-130 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014086 [exp] 378 / 4e-127 AT2G15490 496 / 4e-173 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10014084 [exp] 353 / 5e-118 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019831 [exp] 334 / 1e-110 AT2G15490 425 / 8e-146 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10016268 [exp] 317 / 2e-103 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.001G303100.2 pacid=42790070 polypeptide=Potri.001G303150.1.p locus=Potri.001G303100 ID=Potri.001G303100.2.v4.1 annot-version=v4.1 ATGGGTGGTGAGGAGAATCAGGTACACATCTTCTTCTTCCCCTTCATGGCAAATGGCCACATGATACCGAACATGTTTCCAGAACAATCCAGAGGTCAAA AGTTTTTTTGCTCACCCCTAGATATCAATATCAAAACCATCAAGTTTCCTGCTGTTGACGTTGGATTGCCAGAAGGATGCGAAAACACAGATTTGATCAC TTCTCATGAGATAGAGGGAGAAATGACCAAATTTTTTTCCATGGCAACAACCATGCACCAACAACCACTTGAGAAGCTACTACAAGAATGCCACCCTGAT TGTCTTACTATTGACATGTTCCTTCCTTGGACTACTAATGCTGCAACCAAATTTGGGATTCCAAGATTAGTATTTCATGGCATCAGTTGCTTTTCTTTGT GCACTTTAGATTGCTTGAACATATATATGCCGTATAAGAAAAGTTCTTCTGATTCTAAGCTGTTTGTGGTGCCTGAGCTTCCTGGTGACATCAAGTTCAG AAGCAAGCACCTGCCAGAATATGTGAAACAAAACGTGGAAACTGATTTTACTAGGTTAATTCAAAAGGTTAGAGAATCATCATTGAAGATTTTTGGGATT GTCTTAATACAAAGAGTCCAAGATGGAAGAAGAGAAAGAGAGAACTATGTTATTTTAATAATAAAAACTTACATCTACATATCGGTTATAGGAAAGAAAG CTTTAATTGACGAACATGAGTGTTTGAAATGGCTCGACTCAAAGAAGCCTAATTCAGTTGTTTATATATGCTTTAAAACTGTAGCCATTTTCAGTGATTC TCAGCTAAAGGAGATTGTGTTGAAGTTTGCTTCAACTCTTGAAGCTTCAGGGCAGCAGTTTATTTGGGTTGTCAGGAAAGACAAGAAAGCTAGAGATAAA GAGGAATGGTTGCCTGAGGGATTTGAGAAAAGAATGGAAAGCAAGGGACTGATTATAAGAGGATGGGCGCCACAAGTAGTGATTCTCGATCACGAAGCTA TAGGGGGGTTTGTGACTCATTGCGGGTGGAATTCGACCATTGAAGGCATAGCTGCCGGGAAGCCAATGGTAACATGGCCAGTTTCCGCAGAGCAATTCTT TAATGAGAAGCTGGTGACTGACGTGCTAAAAATTGGTGTGGCTGTTGGTGTTCAACATTGGGTTACAGTATACGGGGATAAAATTACGAGTGGAGCCGTA GAAAAGGCCGTAACTCGAATCATGACAGGTGAAGAAGCAAAGGAAATGAGAAGCAGAGTTGAGGCCCTTGGAGGAATGGCAAAGAGGGCTATCGAAGAAG ATGGTTCATCTTACTCTAATTTGAATGCTCTAATTGAAGAATTAAGAGGCAGGCGCCACTGA
AA sequence Show only first row Show all	>Potri.001G303100.2 pacid=42790070 polypeptide=Potri.001G303150.1.p locus=Potri.001G303100 ID=Potri.001G303100.2.v4.1 annot-version=v4.1 MGGEENQVHIFFFPFMANGHMIPNMFPEQSRGQKFFCSPLDINIKTIKFPAVDVGLPEGCENTDLITSHEIEGEMTKFFSMATTMHQQPLEKLLQECHPD CLTIDMFLPWTTNAATKFGIPRLVFHGISCFSLCTLDCLNIYMPYKKSSSDSKLFVVPELPGDIKFRSKHLPEYVKQNVETDFTRLIQKVRESSLKIFGI VLIQRVQDGRRERENYVILIIKTYIYISVIGKKALIDEHECLKWLDSKKPNSVVYICFKTVAIFSDSQLKEIVLKFASTLEASGQQFIWVVRKDKKARDK EEWLPEGFEKRMESKGLIIRGWAPQVVILDHEAIGGFVTHCGWNSTIEGIAAGKPMVTWPVSAEQFFNEKLVTDVLKIGVAVGVQHWVTVYGDKITSGAV EKAVTRIMTGEEAKEMRSRVEALGGMAKRAIEEDGSSYSNLNALIEELRGRRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.001G303100 [exp]	0	1
AT1G09040			unknown protein		Potri.005G027300 [exp]	8.94	0.7392
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319900 [exp]	17.88	0.6840
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G113125 [exp]	25.57	0.6763
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.006G039600 [exp]	26.55	0.7018
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G113000 [exp]	28.70	0.6655
AT3G02020		AK3	aspartate kinase 3 (.1)		Potri.002G236800 [exp]	34.98	0.6110
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Potri.001G436100 [exp]	38.72	0.6134	Pt-AERO1.1
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	39.03	0.6483	Pt-LON_ARA_ARA.2
AT2G26200			S-adenosyl-L-methionine-depend...		Potri.006G225600 [exp]	41.23	0.6218
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G113400 [exp]	43.37	0.6501

Compare expression of checked genes

Potri.001G303100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.