Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34120 268 / 9e-91 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) AT4G36910 266 / 3e-90 CBSX1, CDCP2, LEJ2 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) AT1G47271 42 / 9e-05 Cystathionine beta-synthase (CBS) family protein (.1) AT3G54690 43 / 0.0001 SETH3 Sugar isomerase (SIS) family protein (.1) AT5G10860 42 / 0.0002 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G099200 [exp] 354 / 5e-125 AT4G34120 266 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G140800 [exp] 275 / 1e-93 AT4G36910 300 / 6e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.007G046400 [exp] 275 / 1e-93 AT4G36910 301 / 5e-104 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 44 / 2e-05 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.012G099600 [exp] 44 / 9e-05 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.015G098100 [exp] 43 / 0.0001 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.013G161500 [exp] 41 / 0.0003 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002834 [exp] 263 / 2e-88 AT4G34120 260 / 2e-87 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Lus10004992 [exp] 216 / 8e-70 AT4G36910 248 / 1e-82 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10041576 [exp] 182 / 1e-56 AT4G36910 206 / 2e-66 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 2, CBS domain containing protein 1, Cystathionine beta-synthase (CBS) family protein (.1) Lus10027885 [exp] 155 / 5e-46 AT4G34120 157 / 8e-47 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1) Lus10035965 [exp] 43 / 0.0002 AT3G52950 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10025698 [exp] 42 / 0.0002 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10034441 [exp] 41 / 0.0005 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10019117 [exp] 40 / 0.0006 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.001G303900.2 pacid=42792227 polypeptide=Potri.001G303900.2.p locus=Potri.001G303900 ID=Potri.001G303900.2.v4.1 annot-version=v4.1 ATGGCTTCTGTTGCGAACACTTTACTACTCTCTCTGCCTCCGCCACTCTGTTTCAATACCAATAACAACCAGTCACCACCACCTTCTCTTTTTGTTTCTA AAACCCCAAGATCGAAATGTTGTCGTCTTCGCTCCTCCTCCGTCCCTCGATCACCATACCGTTCTTCTGTTGCAGTTGCCTTGTCCACTGTAGCAAACTC TGTTCCGGCGAGAAGTGGGATTTACACAGTTGGTGATTTTATGACCAAGAAGGAGGGTTTATATGTCGTTAAAGCTAACACAACCGTTGATGAGGCATTG GAGGCTCTTGTAGAGAAGAGAATAACTGGGTTTCCCGTCATTGATGATGACTGGAGATTGGTTGGTGTTGTTTCGGATTATGACCTGTTAGCGCTCGATT CCATTTCAGGTGGCTGTCAAAATGACACAAACTTGTTTCCTAATGTTGATAGTTCTTGGAAGACTTTTAATGAGTTACAGAAACTGTTAATCAAGAACAA CGGCAAACTTGTTGGTGATTTGATGACTCCTAATCCTCTAGTTGTTTATGAAACTACCAATCTAGAGGATGCTGTTAGGTTGCTGCTTGAAACAAAATAT CGGCGACTCCCAGTGGTAGATGATGATGGAAAGCTGGTTGGAATCATTACACGGGGAGACATTGTTAGAGCTGCTCTACAGATAAAAAATGCCACTGAAA GGCTTTGCAGTTCATTCTTCCAGGTACAATCAGAGGAAGCTATCAATCTCCTGCCCTGA
AA sequence Show only first row Show all	>Potri.001G303900.2 pacid=42792227 polypeptide=Potri.001G303900.2.p locus=Potri.001G303900 ID=Potri.001G303900.2.v4.1 annot-version=v4.1 MASVANTLLLSLPPPLCFNTNNNQSPPPSLFVSKTPRSKCCRLRSSSVPRSPYRSSVAVALSTVANSVPARSGIYTVGDFMTKKEGLYVVKANTTVDEAL EALVEKRITGFPVIDDDWRLVGVVSDYDLLALDSISGGCQNDTNLFPNVDSSWKTFNELQKLLIKNNGKLVGDLMTPNPLVVYETTNLEDAVRLLLETKY RRLPVVDDDGKLVGIITRGDIVRAALQIKNATERLCSSFFQVQSEEAINLLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Potri.001G303900 [exp]	0	1
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.011G031700 [exp]	1.41	0.9556	ANR/BAN2,Pt-BAN.1
AT1G16260			Wall-associated kinase family ...		Potri.001G040628 [exp]	10.24	0.9545
AT4G32250			Protein kinase superfamily pro...		Potri.006G255700 [exp]	14.07	0.9450
AT3G25830		ATTPS-CIN	"terpene synthase-like sequenc...		Potri.011G031800 [exp]	14.83	0.9599
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Potri.009G102500 [exp]	15.19	0.9506
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Potri.015G110000 [exp]	17.88	0.9488	Pt-ERD1.3
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.001G112600 [exp]	25.74	0.9452
AT5G16340			AMP-dependent synthetase and l...		Potri.019G068001 [exp]	27.27	0.9184
					Potri.003G165550 [exp]	29.46	0.9542
AT2G17500			Auxin efflux carrier family pr...		Potri.005G099300 [exp]	29.54	0.9097

Compare expression of checked genes

Potri.001G303900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.