Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34100 1553 / 0 RING/U-box superfamily protein (.1.2) AT4G32670 239 / 1e-65 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G02960 64 / 2e-10 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT1G14260 61 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G47550 60 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT1G02610 59 / 4e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G62460 57 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G38070 57 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01275 57 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G06330 57 / 3e-08 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G099400 [exp] 1816 / 0 AT4G34100 1607 / 0.0 RING/U-box superfamily protein (.1.2) Potri.010G169200 [exp] 64 / 8e-11 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 63 / 3e-10 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.014G121900 [exp] 61 / 8e-10 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.017G122300 [exp] 58 / 8e-09 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 58 / 1e-08 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.002G196600 [exp] 57 / 1e-08 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G093500 [exp] 56 / 6e-08 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 55 / 9e-08 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019839 [exp] 1608 / 0 AT4G34100 1668 / 0.0 RING/U-box superfamily protein (.1.2) Lus10014076 [exp] 1502 / 0 AT4G34100 1575 / 0.0 RING/U-box superfamily protein (.1.2) Lus10030472 [exp] 62 / 9e-10 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10012826 [exp] 61 / 1e-09 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10036754 [exp] 61 / 1e-09 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10034640 [exp] 60 / 3e-09 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035271 [exp] 60 / 3e-09 AT2G01275 240 / 2e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10019102 [exp] 60 / 4e-09 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034454 [exp] 59 / 7e-09 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10038632 [exp] 59 / 2e-08 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G304100.1 pacid=42788576 polypeptide=Potri.001G304100.1.p locus=Potri.001G304100 ID=Potri.001G304100.1.v4.1 annot-version=v4.1 ATGGAGATCGACTCCGCGGTGGAGCCACCGCCACAACAACATCCGAGCACCGCCGAAGCCCCCCCCGAGAGCGTAAACCAGACACAATCTCCATCCGGTT CGATGGGGATAGAGGAGAGTTACGGAGCGGCGGCGGCGAGGTTTGATGATGACGAGGAAGAGGAGGGGGATGTTTGCAGGATATGTAGGAATCCAGGAGA TGCGGAGAATCCGTTACGGTATCCTTGCGCTTGCAGTGGTAGTATTAAGTTTGTTCACCAGGATTGTCTCCTTCAGTGGCTCAATCATAGTAATGCTCGC CAATGCGAGGTTTGCAAACATCCATTTTCTTTCTCTCCTGTTTATTCTGAGAATGCCCCGGCAAGGCTTCCTTTTCAGGAGTTTGTAGTAGGGATGGCAA TGAAGACTTGCCATGTTCTGCAATTCTTTTTGCGTCTCAGTTTCGTGCTTTCTGTCTGGCTTCTAATTATACCCTTCATAACGTTTTGGATATGGAGGTT GGCTTTTGTGAGGAGTTTTGTTGAAGCCCAGAGATTATTCTTAAGTCATATCTCCACTACTGTTATTCTTACCGATTGTCTGCATGGGTTCCTGCTTTCT GCGAGTATTGTTTTCATTTTTCTTGGTGCAACTTCTTTAAGAGATTATTTTAGGCATTTAAGAGAGCTTGGAGGACAGGATGCTGAGAGAGAAGATGATG GAGACCAAAATGGTGCCCGTGCTGCAAGACAACAACCAGGACAGGCTAATAGAAATGTTGCTGGTGAGGCAAACGCTGAAGATGCTGGTGGAGCACAAGG AATTGCTGGGGGTGGTCAAATAATCCAAAGGAATGTGGAGAATGTTGCTGCTCGATGGGAGATGCAGGCAGCTCGTCTCGAGGCTCATGTTGAGCAGATG TTTGATGGTTTAGATGATGCTGATGGTGCAGAGGATGTGCCCTTTGATGAGCTTGTGGGCATGCAGGGTCCTGTTTTCCATTTAGTTGAAAATGCATTCA CTGTTTTGGCTAGCAATATGATATTCCTTGGTGCTGTAATCTTCGTGCCATTTTCATTGGGACGGATTATCCTATACTACATATCATGGCTTTTCTCTTT TGCAAGTGTTCCTGTGCTGTCAACAGTCATGCCTCTTACTGATACTGCCCTCTCCTTAGCAAATATCACCTTGAAGAATGCATTAACTGCTGTTGCAAAT TTGACATCTGAAGGTGAAGACAGTGGGGTTCTTGGTGAGGTTGCAGACATGTTAAATGCAAATGTCAGTGGACTAAATGAAGTTGCAAATAACTTAAGCA GTCCACTTTCTTCAGATCTCCTAAAAGGGGCAAGTGTTGGCACATCACGGCTTTCTGATGTCACAACTCTTGCTATTGGATACATGTTTATATTCTCTTT AGTCTTCTTCTATCTTGGTATTATTGCTTTAATTCGGTACACTAGGGGTGAACCTTTGACTATGGGGAGATTTTATGGTATTGCTTCTATAGCAGAGACA ATTCCATCCCTCTTCAGGCAGTTCTTGGCAGCCATGAGACACTTGATGACCATGATTAAGGTTGCCTTCCTTCTGGTTATCGAACTTGGGGTGTTTCCTT TGATGTGTGGATGGTGGTTGGATGTTTGTACCATAAGGATGTTTGGAAAGTCTATGGCTCAAAGGGTTCAATTCTTCGTGATTTCTCCTTTAGCAAGCTC ATTAGTTCATTGGGTTGTAGGAATTGTTTACATGTTACATATAAGCATTTTCGTGAGCCTTCTTCGTGGGGTTTTGCGTCAAGGGGTTTTGTATTTTCTT CGAGATCCAGCAGATCCTAACTACAACCCGTTCCGTGATTTAATTGATGATCCTGTGCACAAGCATGCTCGCAGAGTTTTATTGTCTGTTGCTGTTTATG GAAGTCTAATTGTGATGCTTGTATTCTTACCCGTTAAACTTGCTATGAGAATGGCACCTTCTATTTTTCCACTGGACATATTGGTATCCGACCCATTTAC TGAAATTCCGGCTGACATGCTTCTCTTTCAAATCTGCATCCCATTTGCCATTGAACATTTTAAGTTGCGGACCACAATCAAGTCCCTTCTCCACTACTGG TTTACGGCAGTTGGCTGGGCACTTGGCTTAACAGATTTCATACTGCCTGGACCTGAGGACAGTGGTGTTCAAGACAATGGAAACGCGGAGCAAGGAAGAC AGGATAGACTACAGGTAGCTCAACTCGGTGGACAGGATCGGGCTGTAGTGGCCCTTGCAGCCGCAGATGACCAAAACAGGACCACTCTTACAGCAGGAAG TTCTGCGGAGGAGGATGATAGTGATGAACAATCTGATTCAGATAGGTACAGCTTTGCTCTTCGTATCGTCCTCTTGCTGGTGGTGGCATGGATGTCTTTA CTTATCTTCAACTCCGTGTTGATAGTTGTTCCGATATCACTTGGGCGTGCTCTTTTCAATGCCATTCCTCTTCTGCCAATAACTCATGGCATCAAGTGCA ACGATCTTTATGCTTTTGTAATTGGAAGTTATGTCATTTGGACGGCTTTAGCTGGAGCAAGATACTCCATTGAGCAAATTAGAACCAAGAGGGCAACAGT GTTGTTTAGCCAAGTATGGAAGTGGTGTAGCATTGTTCTTAAGAGCTTGGCTCTTTTGTCAATATGGATCTTTGTTATCCCAGTGTTGATTGGGCTTCTC TTTGAGCTTTTGGTAATTGTGCCATTGCGGGTGCCTGTAGATGAAAGCCCAGTTTTCCTTTTGTATCAGGATTGGGCATTGGGGCTCATCTTTCTTAAGA TCTGTACTCGGCTGGTTATGTTGGACCAGGTGATGCCACTGGTGGATGAAAGTTGGCGAACGAAATTTGAAAGGGTGAGAGAAGATGGTTTCTCAAGGCT GCAATGCCTTTGGGTACTGCAGGAGATTGTGTTCCCAATAATAATGAAGCTGCTAACAGCCTTGTGCGTACCTTATGTCTTAGCAAGAGGAGTATTTCCT GTGCTTGGGTACCCTATGGCAGTAAACTCAGCAGTGTACCGATTTGCATGGCTGGGATGTCTCTGCTTCAGCCTGCTGTGCTTTTGTGCCAAGAGATTCC ATGTCTGGTTCACCAACCTTCACAATTCAATTCGTGATGATCGCTATCTCATTGGACGCAAGCTACATAACTATGGGGAGGATCTAGGAGAGGAGCAAAA TGAGGCAGGGACTTCCTCCGAAGCACAAAATTCAAATTCACAGGACACTGGTTTGATTCGAGAAGCTGATGTGGGAATTAGACAAAGACGTGCTAATCGA CAGGAAGCTTAA
AA sequence Show only first row Show all	>Potri.001G304100.1 pacid=42788576 polypeptide=Potri.001G304100.1.p locus=Potri.001G304100 ID=Potri.001G304100.1.v4.1 annot-version=v4.1 MEIDSAVEPPPQQHPSTAEAPPESVNQTQSPSGSMGIEESYGAAAARFDDDEEEEGDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNAR QCEVCKHPFSFSPVYSENAPARLPFQEFVVGMAMKTCHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFVEAQRLFLSHISTTVILTDCLHGFLLS ASIVFIFLGATSLRDYFRHLRELGGQDAEREDDGDQNGARAARQQPGQANRNVAGEANAEDAGGAQGIAGGGQIIQRNVENVAARWEMQAARLEAHVEQM FDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGAVIFVPFSLGRIILYYISWLFSFASVPVLSTVMPLTDTALSLANITLKNALTAVAN LTSEGEDSGVLGEVADMLNANVSGLNEVANNLSSPLSSDLLKGASVGTSRLSDVTTLAIGYMFIFSLVFFYLGIIALIRYTRGEPLTMGRFYGIASIAET IPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSMAQRVQFFVISPLASSLVHWVVGIVYMLHISIFVSLLRGVLRQGVLYFL RDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDILVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLHYW FTAVGWALGLTDFILPGPEDSGVQDNGNAEQGRQDRLQVAQLGGQDRAVVALAAADDQNRTTLTAGSSAEEDDSDEQSDSDRYSFALRIVLLLVVAWMSL LIFNSVLIVVPISLGRALFNAIPLLPITHGIKCNDLYAFVIGSYVIWTALAGARYSIEQIRTKRATVLFSQVWKWCSIVLKSLALLSIWIFVIPVLIGLL FELLVIVPLRVPVDESPVFLLYQDWALGLIFLKICTRLVMLDQVMPLVDESWRTKFERVREDGFSRLQCLWVLQEIVFPIIMKLLTALCVPYVLARGVFP VLGYPMAVNSAVYRFAWLGCLCFSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRKLHNYGEDLGEEQNEAGTSSEAQNSNSQDTGLIREADVGIRQRRANR QEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34100			RING/U-box superfamily protein...		Potri.001G304100 [exp]	0	1
					Potri.004G234150 [exp]	1.41	0.9642
AT4G22740			glycine-rich protein (.1.2)		Potri.003G115400 [exp]	2.82	0.9691
AT5G41110			unknown protein		Potri.012G104200 [exp]	5.83	0.9458
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.009G015700 [exp]	8.12	0.9508	Pt-PM37.1
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.006G088000 [exp]	8.12	0.9613
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.002G112300 [exp]	9.43	0.8853
AT5G11090			serine-rich protein-related (....		Potri.018G120400 [exp]	10.95	0.9024
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	10.95	0.9571
AT2G35050			Protein kinase superfamily pro...		Potri.003G110000 [exp]	12.04	0.8558
AT1G77840			Translation initiation factor ...		Potri.004G093600 [exp]	12.80	0.8888

Compare expression of checked genes

Potri.001G304100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.