Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23360 280 / 1e-80 Plant protein of unknown function (DUF869) (.1) AT3G19370 264 / 1e-76 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3) AT1G19835 236 / 4e-65 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 206 / 1e-54 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 181 / 1e-46 Plant protein of unknown function (DUF869) (.1) AT3G05270 112 / 3e-25 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G77580 99 / 4e-21 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 84 / 2e-16 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G099500 [exp] 1402 / 0 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1) Potri.005G140300 [exp] 414 / 6e-129 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 407 / 4e-126 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.002G024400 [exp] 234 / 5e-64 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 224 / 8e-61 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 124 / 6e-29 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.007G098500 [exp] 114 / 8e-26 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 112 / 3e-25 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 111 / 4e-25 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004994 [exp] 330 / 7e-98 AT2G23360 481 / 7e-154 Plant protein of unknown function (DUF869) (.1) Lus10019839 [exp] 318 / 2e-91 AT4G34100 1668 / 0.0 RING/U-box superfamily protein (.1.2) Lus10014076 [exp] 297 / 2e-84 AT4G34100 1575 / 0.0 RING/U-box superfamily protein (.1.2) Lus10024324 [exp] 215 / 1e-57 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 214 / 2e-57 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 208 / 2e-55 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 190 / 5e-52 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024325 [exp] 193 / 8e-51 AT1G19835 787 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10018164 [exp] 104 / 1e-22 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 100 / 2e-21 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [poplar] [flax] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Potri.001G304200.1 pacid=42788189 polypeptide=Potri.001G304200.1.p locus=Potri.001G304200 ID=Potri.001G304200.1.v4.1 annot-version=v4.1 ATGGACAACAAGACATGGTTTTGGAGGAAAAGATCTTCCGAAAAGACAATTGTAGCAACAAACAAATTCGGCATTTCTGTGAAAGGAATTGATGAAGAGA CACAAAATATTCCAACTGGGAATGGAGTAGGACCAGTTAGAGCTGTAAGAAACTTAAACGAGAAGTTAGCTTCAGTGCTTCTTGATTGTCATGTTGTGAC AGAAAATGAAAAATCAGTACCAAGAGCCACTGCAGGCCAGGAAAAGGAAGAGGCAGAAGTAGATTGCCTAAAGAAAGAACTGGATGGAGATCCGAAGAAG GGATTAGCTGCAAATCAAAAATTAAGTCACCCAGATGCTGCATTAAAGAAATGCATGCAGCAGCTGAACTCTTTCCGAGAAGAACAGGAGCAAAAGATAC ATGATGCTGTCATGGAAGCAACAAGTGAATTTGAGAAGGCACAGAAAACTTTGGAAGTCAAGTTGATGGAGACAAGCAAAAGGCTTACTAATTTAGCCAT TGAGAACACAAATCTGAGTAATGCCCTTTTACTCAAAGAGAAATTGGTGGAAGAACTGCATAAACGTGCATCTCAGACAGTTGCAGAATTCAATACTCTA ATGGCTAGATTAGATAACACAGAAAAAGAAAATGCTTTTCTGAAGTACGAGTTTCACATGCTTCAGAAGGAACTTGAGGTTCGAAATGAGGAGCTGGAAT ATAATCATCGTTCTGCTGATGCATCACGCAGGCAACACTTGGAGAGTATGAGGAAAGTCACAAAGCTAGAAGCAGAATGTCAGAGACTTCGTACCCTAAT GCGGAAAAGGCTGCCTGGTCCTGCAGCTTTCTCAAAGATGAAGAGTGAAGCCGAAATGCTGGGAAGGGATCAGATGGAATTAAGAAAACCGAACCTCACC AGAGATTTGGTAGTCAGAGACCCCATCATGGGAAATTTTCCAGAAACTCCTGTGAAGAACGTTGATTTCCTGATCGATCAATTGCTTGGTAAGGAAGAGG AGAATAAAGCTCTCAGAGAAATGATGAGCAGGAAGAATGCCGAGCTTCAATCTTCAAGGATCATGTTTTCACGAACAGCTTCAAGGTTATCACAGGTCGA GGCTCAGCTTGTAGAGCTTTCTGGAGACCAGAGGTCTTTGGAGCTGGCAAAGCATAGTCCATCATCACGTGAAATCCACTCTCCAACTGCAGGTTCGGAT ACTGGATCATTGGCTAATGCTCTAATCGCAGAATTGGAACACTTCAGAGATAGGAAACTCAAGAGTCCGTCGGAATGTAAAGACATTGAAGTTCTGGACA TGAGTTTAATGGATGATTTTGTTGAGATGGAGAAATTAGCTATAGTTTCCACACAAACACCTTCTGCGGGTGGGAATAGCTCTTTCTCGGCTGGTAAGGA ACTAGTTCCCATTGAACTAGATCATTCTGGTTATAGAGACAAGAAACAAGAGATCCATTCAAAACAAGATTCAACTGATAAGTCTTTTGACTGGCTTCAG GTAGTTCTGAATGCAATATTTAAACAGCAGCGTATTTCAAAACGAAGTCTAACTGAACTCCTGGAGGACATTAAAATTGCTTTAGGGTATATAAATCATC CAAATGCTTCTGAACCTGATGCAGCAGCATTATCAAGGCATCCTTTGGAATGTGATATTGGTGGTTATATCACTTGGAAGTCTCCAAATGAATCTTCAAT TGCAAATTCATTGAATGAAACTTCCAGTATCGACACCCCTATGAAAGAAACAAGCAAACAACATGATCAATCTAATCTGAGTAATCTGCAAGAAGAGAAC GGGAGACTGGAAAATGAGCTGGATAATATGGAAGCCAGGCTGCAGTCTGCAACTGATAAGACGGAGACCCTGATGGTGAAGCTTCGGGAATCAGAACAAA GAGTTGAAAGGTTACAAGCAGAAGTGGAAATTTTGAAGGAATCAAAAGGAATGGTAGAGGATCAGATTGAAAATCAGAAGTCAATCAATGAAGATCTTGA TACTCAGCTTACAGTTACCAAAGCTAAATTGAATGAGGTCTTCCAGAAATTTTCATCTTTGGAAGTTGAATTGGAAGACAGAAGTAACTGCTGTGAAGAA TTAGAAGCAACTTGTCTTGAGCTTCAACTTCAGCTGGAAAGTGCTGCGAAGGAAACCCTGAGCTGCGGCATAAATAAAGAGGGAAAGCATCCACAGGATG GCTGGGAGATCAAAGCAGCTTCTGTGAAGTTGGCAGAATGCCAAGAAACCATCCTTAATCTTGGAAAACAACTGAAGGCTCTGGCTTCACCAAGAGAAGC AGCACTCTTTGACAAGGTTTTCACCACTACTGGTGCCACTACCACAGCCACCAATATCAGGAACTTGAACAAGCGCTTCTCCTTGCGTGATCAAATGCTA GCTGAAGATAGATCTAAGGAAATTATTCTCAGATCTCCAACTGAAGATGCACAAAAATCCTCTCTTGACCACTCAGATAATGGTAATGGATTGATTAGTC CTAATGCCTTGGTATGTGCTCCTGAAGCATATATTGGACCAGAGCACAAAGCCGGTGATGCAGCAGTTGAAGCTCTGGCTATTGTTCCTAGTAAAAACCA AGGATTTGGTTTGCTAAGGAGGCTATTAATGAGGAGGAAGAAAGGGACAAGCAAGAAGTCCCGATCCTTAGTGAAGGTATGA
AA sequence Show only first row Show all	>Potri.001G304200.1 pacid=42788189 polypeptide=Potri.001G304200.1.p locus=Potri.001G304200 ID=Potri.001G304200.1.v4.1 annot-version=v4.1 MDNKTWFWRKRSSEKTIVATNKFGISVKGIDEETQNIPTGNGVGPVRAVRNLNEKLASVLLDCHVVTENEKSVPRATAGQEKEEAEVDCLKKELDGDPKK GLAANQKLSHPDAALKKCMQQLNSFREEQEQKIHDAVMEATSEFEKAQKTLEVKLMETSKRLTNLAIENTNLSNALLLKEKLVEELHKRASQTVAEFNTL MARLDNTEKENAFLKYEFHMLQKELEVRNEELEYNHRSADASRRQHLESMRKVTKLEAECQRLRTLMRKRLPGPAAFSKMKSEAEMLGRDQMELRKPNLT RDLVVRDPIMGNFPETPVKNVDFLIDQLLGKEEENKALREMMSRKNAELQSSRIMFSRTASRLSQVEAQLVELSGDQRSLELAKHSPSSREIHSPTAGSD TGSLANALIAELEHFRDRKLKSPSECKDIEVLDMSLMDDFVEMEKLAIVSTQTPSAGGNSSFSAGKELVPIELDHSGYRDKKQEIHSKQDSTDKSFDWLQ VVLNAIFKQQRISKRSLTELLEDIKIALGYINHPNASEPDAAALSRHPLECDIGGYITWKSPNESSIANSLNETSSIDTPMKETSKQHDQSNLSNLQEEN GRLENELDNMEARLQSATDKTETLMVKLRESEQRVERLQAEVEILKESKGMVEDQIENQKSINEDLDTQLTVTKAKLNEVFQKFSSLEVELEDRSNCCEE LEATCLELQLQLESAAKETLSCGINKEGKHPQDGWEIKAASVKLAECQETILNLGKQLKALASPREAALFDKVFTTTGATTTATNIRNLNKRFSLRDQML AEDRSKEIILRSPTEDAQKSSLDHSDNGNGLISPNALVCAPEAYIGPEHKAGDAAVEALAIVPSKNQGFGLLRRLLMRRKKGTSKKSRSLVKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23360			Plant protein of unknown funct...		Potri.001G304200 [exp]	0	1
AT3G53190			Pectin lyase-like superfamily ...		Potri.006G122000 [exp]	1.41	0.9333
AT3G54030			Protein kinase protein with te...		Potri.006G093900 [exp]	2.00	0.9237
AT1G62050			Ankyrin repeat family protein ...		Potri.004G013500 [exp]	3.46	0.9137
AT3G17350			unknown protein		Potri.010G152900 [exp]	5.47	0.9219
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	6.00	0.9187
AT4G38660			Pathogenesis-related thaumatin...		Potri.009G132500 [exp]	7.48	0.9101
AT2G25270			unknown protein		Potri.018G023200 [exp]	8.06	0.9153
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Potri.015G122100 [exp]	8.66	0.8815
AT1G01225			NC domain-containing protein-r...		Potri.014G101300 [exp]	10.00	0.9005
AT5G59350			unknown protein		Potri.010G206100 [exp]	10.81	0.8738

Compare expression of checked genes

Potri.001G304200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.