Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49770 179 / 2e-54 bHLH ZOU, RGE1, bHLH095 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G025900 [exp] 214 / 5e-68 AT1G49770 138 / 9e-39 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024812 [exp] 167 / 4e-50 AT1G49770 156 / 6e-46 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002390 [exp] 137 / 2e-38 AT1G49770 128 / 7e-35 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018723 [exp] 64 / 2e-12 AT1G49770 66 / 7e-14 ZHOUPI, RETARDED GROWTH OF EMBRYO 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G305100.2 pacid=42787909 polypeptide=Potri.001G305100.2.p locus=Potri.001G305100 ID=Potri.001G305100.2.v4.1 annot-version=v4.1 ATGTCAGAAGAAGGAGAGCATGAAAGTTTCTTGTGGGATAACCAAACTTGGGATTTATCAAATTCTGATAATTTGGGTGGAAGTGAAGAGAAAATAGGGA AGAACATTAAGTTGCCGGGTTCGAGCTCAAATAGCCAAGCAGAAATAGGGATCAAAGAACAAGAAAACAAGGCCGAGAAGAGAGGTCAAATGCACAAAAG TAATGGTAAGGGAAGCGTAGGCGAGGTTAAAGAAGGAAAAGGAGGAGGTGAATCAGATCATGAGACACATATATGGACTGAGAGAGAAAGGAGAAAGAAG ATGAGGACCATGTTCTCTAATCTTCATGCTTTGCTTCCTCAACTTCCTCCCAAGGCTGACAAGTCCACCATTGTTGATGAAGCAATGAACTATATCAAAA CCCTACAGCACACTCTCCAAAAGTTACAAAAAGAGAAGCTAGAAAGGCTCCAAGGTGCCACGACTTTCGGTTATGAGCCATCTTTGATTGCCCCACAAAT GCAAGCAGACTCCAGAGAGGCGTTCTTAGCTGATCAAGTATCTTCTAGTAACTTGGCAATTAGCACAACAAAATCTTTACCCTCAGTCTCAAGATATCCT GTACTCTTTCAAACTTGGACTTCTTCAAATGTGGTGTTGAATATTTGTGGAGATGAAGCCCAAATTAGTATATGCTCTCCAAAGAATCCGGGACTCTTCA CCACTATCTGCTATGTGTTGGAGAAGCATAATGTCGAGGTGCTGTCTGCTCATGTTTCCTCTGATTGCAGTCGGAGCATGTACATGATTCAAGCTCATGC AAGTGGAGCTTCTGATCAGTTCGGAGAGACATTTCCAGTGGAGGAAGTATTCAAACAAGCTGCATGTGAGATAATGTGCTGGGTCTCTTCCTGA
AA sequence Show only first row Show all	>Potri.001G305100.2 pacid=42787909 polypeptide=Potri.001G305100.2.p locus=Potri.001G305100 ID=Potri.001G305100.2.v4.1 annot-version=v4.1 MSEEGEHESFLWDNQTWDLSNSDNLGGSEEKIGKNIKLPGSSSNSQAEIGIKEQENKAEKRGQMHKSNGKGSVGEVKEGKGGGESDHETHIWTERERRKK MRTMFSNLHALLPQLPPKADKSTIVDEAMNYIKTLQHTLQKLQKEKLERLQGATTFGYEPSLIAPQMQADSREAFLADQVSSSNLAISTTKSLPSVSRYP VLFQTWTSSNVVLNICGDEAQISICSPKNPGLFTTICYVLEKHNVEVLSAHVSSDCSRSMYMIQAHASGASDQFGETFPVEEVFKQAACEIMCWVSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Potri.001G305100 [exp]	0	1
AT3G07600			Heavy metal transport/detoxifi...		Potri.009G048300 [exp]	14.35	0.8744
					Potri.002G021100 [exp]	23.53	0.8692
AT3G63380			ATPase E1-E2 type family prote...		Potri.005G052700 [exp]	30.85	0.8123
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.012G120676 [exp]	38.52	0.8321
AT3G29970			B12D protein (.1)		Potri.017G098800 [exp]	40.62	0.8445
AT2G39510			nodulin MtN21 /EamA-like trans...		Potri.008G051500 [exp]	43.74	0.8360
AT5G17680			disease resistance protein (TI...		Potri.019G113701 [exp]	98.34	0.8199
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Potri.005G187600 [exp]	120.34	0.7660
AT4G34880			Amidase family protein (.1)		Potri.004G171000 [exp]	183.80	0.7795
AT4G39700			Heavy metal transport/detoxifi...		Potri.005G079800 [exp]	193.22	0.7874

Compare expression of checked genes

Potri.001G305100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.