Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21060 756 / 0 RBL RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 61 / 2e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56130 51 / 9e-07 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50650 50 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 50 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT2G01470 47 / 2e-05 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT3G49660 45 / 9e-05 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G71840 45 / 0.0001 transducin family protein / WD-40 repeat family protein (.1) AT5G67320 44 / 0.0003 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G50230 43 / 0.0004 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G000900 [exp] 941 / 0 AT3G21060 741 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 64 / 1e-10 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 55 / 4e-08 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G111800 [exp] 50 / 4e-06 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1) Potri.007G009500 [exp] 49 / 5e-06 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G055800 [exp] 47 / 2e-05 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G148500 [exp] 46 / 4e-05 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 46 / 4e-05 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.015G087200 [exp] 45 / 8e-05 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035969 [exp] 814 / 0 AT3G21060 737 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Lus10025693 [exp] 810 / 0 AT3G21060 738 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Lus10030869 [exp] 56 / 5e-08 AT1G10580 939 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 55 / 7e-08 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 51 / 1e-06 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10030620 [exp] 50 / 4e-06 AT1G10580 926 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 46 / 4e-05 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001717 [exp] 45 / 0.0002 AT3G05090 1085 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017180 [exp] 44 / 0.0003 AT3G09080 608 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024972 [exp] 44 / 0.0005 AT5G67320 819 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G305500.1 pacid=42789864 polypeptide=Potri.001G305500.1.p locus=Potri.001G305500 ID=Potri.001G305500.1.v4.1 annot-version=v4.1 ATGAATGCTCCAATAATTGATCCACTGCAAGGAGATTTTCCAGAAGTGATAGAGGAGTATTTGCAACATGGGCTTATGAAATGTATTGCTTTTAATCGTC GCGGCACGCTTCTTGCTGCTGGATGCACTGATGGAAGTTGTGTTATTTGGGACTTTGAGACCAGGGGAATTGCAAAAGAGCTCCGGGATAAAGATTGTGT TGCTGCCATAACAAGTGTCTGTTGGTCGAAGTATGGTCATCGAATTCTTGTGTCTGCTGCTGACAAATCACTAACACTTTGGGATGTTGTCAGTGGAGAG AAGATTACTCGCATTACTCTTCAGCAAACCCCACTACTAGCTCGGCTACATTCTGGATCCTCTACTCCATCTCTCTGCCTGGCATGCCCACTTTCATCTG CTCCCATCATTGTAGATTTAAACACAGGAAACACCACTTTGCTACCAGTTACAGTAGCTGATGTGGACAATGGACTTGCCCCACCATCACGTAACAAGCC CACAGATGGTCTCCCTTTCACTCCCACTGCCGCATGCTTTAACAAGTGTGGGGATCTGGTTTATGTGGGAAATTCCAAAGGAGAAATACTTATAATAGAT CCCAAAAGCATTCAAGTGCATGCCATGGTTCCCACTCCCGGTGGTGCTGTGATTAAGAACATAGTTTTCAGCAGAAATGGACAGTTTCTTCTTACAAATT CAAATGACCGGACAATTAGGATATATGAAAATCTTCTTCCTCTTAAAGATGGTCTCATGGCTTTAGAGGACCTGAACAAGACTCTTGATGAGGTAGCTGG TGTCGAGAGAATGAAGGTTGTTGGATCAAGGTGCTTAGCACTTTTCCGGGAATTCCAGGATATCATCACCAAAGTGCACTGGAAAGCGCCTTGTTTCAGT GGTGATGGGGAATGGGTTATTGGTGGTTCTGCGAGCAAGGGAGAGCACAAGATCTACATATGGGATAGAGCTGGACATCTTGTAAAAATCCTTGAAGGTC CAAAAGAAGCATTGATTGATTTAGCCTGGCATCCTGTTCACCCTATTATTGTCTCTGTTTCATTGACTGGCTTGGTTTATATTTGGGCTAAGGACCATAC TGAGAACTGGAGTGCATTTGCCCCAGACTTCAAAGAGCTAGAGGAAAATGAAGAGTACGTGGAACGTGAAGATGAATTTGATCTGATACCTGGAACTGAA AAGGTAAAAGAATCAGATATTAATCAAGATGATGAAGTTGATATTGTAACAGTGGAGAAAGATGCTTTCAGTGATTCAGATGTGTCTCAAGAAGAACTGT GTTTCTTGCCAGCTACCCCTTGTCCTGACGTTCTTGAGCAACAAGATAAGTGTGTGGGAAGTTCTTCAAAGCTGGTGGATTCAAATAATTCTGGTTCCCC TCTGTCTGAAGAAGCTGAACAGAATGGACAAGCAACGAACCATGCATCAAGTCCTCTTGAAGAGGACACGGGAGGGACACGCATGAAGAGAAAACGGAAA CCTTCTGAAAAGGGGTTGGTATTGCAGGCGGGGAAGGTCGGGAAACCATTGAAATCTTCTGGTAGATTGTCAAAATTAAAAAGTAAACCTGATACTGATC TGGATATTGGTAATGGAATGTACGGGGATGGTATTTCTGACTGA
AA sequence Show only first row Show all	>Potri.001G305500.1 pacid=42789864 polypeptide=Potri.001G305500.1.p locus=Potri.001G305500 ID=Potri.001G305500.1.v4.1 annot-version=v4.1 MNAPIIDPLQGDFPEVIEEYLQHGLMKCIAFNRRGTLLAAGCTDGSCVIWDFETRGIAKELRDKDCVAAITSVCWSKYGHRILVSAADKSLTLWDVVSGE KITRITLQQTPLLARLHSGSSTPSLCLACPLSSAPIIVDLNTGNTTLLPVTVADVDNGLAPPSRNKPTDGLPFTPTAACFNKCGDLVYVGNSKGEILIID PKSIQVHAMVPTPGGAVIKNIVFSRNGQFLLTNSNDRTIRIYENLLPLKDGLMALEDLNKTLDEVAGVERMKVVGSRCLALFREFQDIITKVHWKAPCFS GDGEWVIGGSASKGEHKIYIWDRAGHLVKILEGPKEALIDLAWHPVHPIIVSVSLTGLVYIWAKDHTENWSAFAPDFKELEENEEYVEREDEFDLIPGTE KVKESDINQDDEVDIVTVEKDAFSDSDVSQEELCFLPATPCPDVLEQQDKCVGSSSKLVDSNNSGSPLSEEAEQNGQATNHASSPLEEDTGGTRMKRKRK PSEKGLVLQAGKVGKPLKSSGRLSKLKSKPDTDLDIGNGMYGDGISD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Potri.001G305500 [exp]	0	1
AT1G04970			lipid-binding serum glycoprote...		Potri.014G160700 [exp]	15.16	0.6348
AT2G28060			5'-AMP-activated protein kinas...		Potri.004G213600 [exp]	33.61	0.5925
AT4G28540		CKL6, PAPK1	casein kinase I-like 6 (.1)		Potri.002G036000 [exp]	48.85	0.5089
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Potri.009G091000 [exp]	54.32	0.5750
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Potri.006G006000 [exp]	107.54	0.5383	OPT3.2
AT3G17760		GAD5	glutamate decarboxylase 5 (.1....		Potri.012G039000 [exp]	115.96	0.4917
AT3G06240			F-box family protein (.1)		Potri.001G318300 [exp]	131.62	0.5203
AT2G27080			Late embryogenesis abundant (L...		Potri.005G166600 [exp]	155.84	0.4974

Compare expression of checked genes

Potri.001G305500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.