Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24290 783 / 0 MAC/Perforin domain-containing protein (.1.2) AT1G28380 575 / 0 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 448 / 6e-151 MAC/Perforin domain-containing protein (.1) AT1G29690 426 / 7e-143 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001000 [exp] 1093 / 0 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.003G006500 [exp] 836 / 0 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.011G057100 [exp] 647 / 0 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.004G047700 [exp] 629 / 0 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.008G136401 [exp] 514 / 3e-177 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 502 / 2e-172 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 473 / 1e-160 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 438 / 8e-148 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 427 / 2e-143 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012717 [exp] 870 / 0 AT4G24290 764 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10010894 [exp] 869 / 0 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10035789 [exp] 795 / 0 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 737 / 0 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 580 / 0 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 476 / 7e-162 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 474 / 7e-161 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 433 / 9e-146 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 420 / 1e-140 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10034586 [exp] 376 / 2e-119 AT1G14780 567 / 0.0 MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF01823 [poplar] [flax] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Potri.001G305600.1 pacid=42788858 polypeptide=Potri.001G305600.1.p locus=Potri.001G305600 ID=Potri.001G305600.1.v4.1 annot-version=v4.1 ATGAGTAGTGCAAAGAAAGCTGCAGAAGCAGCTATAGAAGCAATTGGCTTGGGATATGATCTGGGTTTTGATTTAAGGCTTAAGTATTGCAAGAAAAACT CACCAAGATTGATAGTGATTAATGATGATGATAAGCACGTGCGTAATATGGTGATTCCTGGTGGGTTTTCTCTTCCTAATGTTCCTAAATCTATCAAATG TGATAAAGGCGAGCGTTTGAGGTTTAGCTCTGATGTTCTTTCTTTTCAACAGATGTCAGAGCAGTTTAACCAGGAACTATCTCTTTCTGGAAAAATTCCT TCGGGCCATTTCAATGCCGCGTTTGAATTTGCAGGAGTTTGGCAGAAAGATGCTGCCAATACTAAAGCCCTTGCTTTTGATGGTGTAAACATCACACTTT ACAGCATTGCACTAGAGAAATCGCAGGTTGTGCTATGTGATCATGTTAAAGAAGCTGTACCGTCATCTTGGGAACCTGCTGCATTGGCAAGGTTTATTGA GAAGTATGGTACACACGCTATTGTCGGCATCAAAATGGGGGGAAAGGACATGATATATATGAAGCAGCAGCATTCATCACCTCTCCAACCTGTTGATGTG CAGAAAAAATTAAAGGACATGGCTGACAAAATGTTTATAGATGGTGGAAGGAGTACCATGAACTCTGATAAATTTTATGATAGAGAAAAGCTTGTCAAGC ATCAGGAGCTGGCATTCATGGACCAATTTCCATCCAGCTCTTCTTCCCACACTGAGGATATTAAATTCATAAGTAAGCGTAAAGGTGGAATGGTTAAAAA CCTACCACACAATGAGTGGTGTCAAACTGTTCAGTCTGAACCTGATGTCATCTCAATGTCATTTGTGCCAATCACATCATTACTGAGTGGAATCAACGGG AGTGGATTTTTGACCCATGCCATTAATCTCTATATCCGATATAAGCCACCAATTGAAGAATTACACCAGTTTTTGGAGTTTCAGCTTCCAAGGCAATGGG CACCAGTATTTGGTGAGCTTGCCCTTGGTCCTGACAGGAAGCAACAAAGTAATGCATCTTTGCAGTTCAGCCTAATGGGTCCTAAGCTTTACGTTAATAC ATCACCAGTCAATGTGGGGAAGAAGCCGGTTACTGGTCTTCGACTGTACTTGGAAGGGAAAAGAAGCAACTGCTTAGCAATCCACTTGCAGCACCTTTCT TCACTGCCAAAGACCTTCCAACTTGCAGATGAACGAAATGGCAACATCTCAGATCCCTCCTCTGACCAAAGATATTATGAGAAGTTGAAATGGAAGAGTT TCTCGCATATCTGCACAGCCCCTGTTGAGTCAGATGATGATCTCTCGATTGTCACTGGAGCTGAGTTTGAAGTTGGAGAATCTGGTTTGAAAAAAGTCCT ATTTTTGCGGCTCCAATTTTCTAAAGTTATGGGTGCCACATCTTTTACGACGTCTGAATGGGATGGTTCCCCTGCCTTGAACCAGAAATCCGGAATAATA TCCACATTGATCAGCACTCGTTTCTCAAGTGCTCAAAAACAGCCTCCACCACAACCTGTCGTGAACATAAACTCAGCTGTGTACCCTGGAGGCCCACCAG TTGCTGCGCAGACCCCTAAACTTTTGAAGCTCGTTGACACAACAGAGATTACTAGAGGACCACAAGACTCACCTGGATACTGGGTTGTATCTGGGGCAAA GCTTAATGTAGACAACGGAAAAATCTCTCTTCGAGTCAAGTACTCTCTACTGCCTTCGGTTTCACCGGATGATGATGTATCGATAGAGATGTAG
AA sequence Show only first row Show all	>Potri.001G305600.1 pacid=42788858 polypeptide=Potri.001G305600.1.p locus=Potri.001G305600 ID=Potri.001G305600.1.v4.1 annot-version=v4.1 MSSAKKAAEAAIEAIGLGYDLGFDLRLKYCKKNSPRLIVINDDDKHVRNMVIPGGFSLPNVPKSIKCDKGERLRFSSDVLSFQQMSEQFNQELSLSGKIP SGHFNAAFEFAGVWQKDAANTKALAFDGVNITLYSIALEKSQVVLCDHVKEAVPSSWEPAALARFIEKYGTHAIVGIKMGGKDMIYMKQQHSSPLQPVDV QKKLKDMADKMFIDGGRSTMNSDKFYDREKLVKHQELAFMDQFPSSSSSHTEDIKFISKRKGGMVKNLPHNEWCQTVQSEPDVISMSFVPITSLLSGING SGFLTHAINLYIRYKPPIEELHQFLEFQLPRQWAPVFGELALGPDRKQQSNASLQFSLMGPKLYVNTSPVNVGKKPVTGLRLYLEGKRSNCLAIHLQHLS SLPKTFQLADERNGNISDPSSDQRYYEKLKWKSFSHICTAPVESDDDLSIVTGAEFEVGESGLKKVLFLRLQFSKVMGATSFTTSEWDGSPALNQKSGII STLISTRFSSAQKQPPPQPVVNINSAVYPGGPPVAAQTPKLLKLVDTTEITRGPQDSPGYWVVSGAKLNVDNGKISLRVKYSLLPSVSPDDDVSIEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24290			MAC/Perforin domain-containing...		Potri.001G305600 [exp]	0	1
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.010G069800 [exp]	4.89	0.7455
AT1G76140			Prolyl oligopeptidase family p...		Potri.005G247400 [exp]	6.00	0.7335
AT1G54610			Protein kinase superfamily pro...		Potri.005G045500 [exp]	6.85	0.6985
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.004G035800 [exp]	7.48	0.7709
AT5G67550			unknown protein		Potri.007G132601 [exp]	7.74	0.7134
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.011G165800 [exp]	9.27	0.8191
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.001G310700 [exp]	13.41	0.7354
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G120800 [exp]	14.14	0.7702
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.019G005256 [exp]	19.67	0.6701
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Potri.007G031500 [exp]	21.02	0.7096

Compare expression of checked genes

Potri.001G305600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.