Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34320 592 / 0 Protein of unknown function (DUF668) (.1) AT5G08660 565 / 0 Protein of unknown function (DUF668) (.1) AT1G30755 396 / 4e-130 Protein of unknown function (DUF668) (.1) AT5G51670 101 / 1e-22 Protein of unknown function (DUF668) (.1) AT3G23160 90 / 1e-18 Protein of unknown function (DUF668) (.1) AT5G04550 74 / 2e-13 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001500 [exp] 973 / 0 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 620 / 0 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 616 / 0 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.002G021400 [exp] 457 / 1e-153 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 448 / 3e-150 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 125 / 2e-30 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.015G131800 [exp] 92 / 2e-19 AT5G51670 442 / 1e-152 Protein of unknown function (DUF668) (.1) Potri.010G074000 [exp] 89 / 4e-18 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Potri.008G164700 [exp] 89 / 4e-18 AT3G23160 661 / 0.0 Protein of unknown function (DUF668) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006049 [exp] 580 / 0 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 557 / 0 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 555 / 0 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028708 [exp] 489 / 6e-166 AT1G34320 827 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017260 [exp] 456 / 7e-153 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017259 [exp] 390 / 8e-129 AT1G30755 484 / 3e-166 Protein of unknown function (DUF668) (.1) Lus10013554 [exp] 341 / 2e-110 AT1G30755 416 / 4e-140 Protein of unknown function (DUF668) (.1) Lus10031691 [exp] 100 / 5e-22 AT5G51670 452 / 2e-156 Protein of unknown function (DUF668) (.1) Lus10028839 [exp] 97 / 5e-21 AT5G04550 282 / 2e-89 Protein of unknown function (DUF668) (.1) Lus10021210 [exp] 91 / 6e-19 AT3G23160 659 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05003 [poplar] [flax] DUF668 Protein of unknown function (DUF668) PF11961 [poplar] [flax] DUF3475 Domain of unknown function (DUF3475)
Representative CDS sequence Show only first row Show all	>Potri.001G305800.1 pacid=42793143 polypeptide=Potri.001G305800.1.p locus=Potri.001G305800 ID=Potri.001G305800.1.v4.1 annot-version=v4.1 ATGGGGGGGACTTGTTCAAAGAAATCCAATGCCAGTAACAAAAAATCCAATCCATATGCAAAGTCTAAGGGGAATGGTGTTGATTCTTATTGCAACAAGC CACATATTTCAAGTACTCAACAAGTGAAGGAAAAAATAGAGAAAAAGGAATTGCAAGAGGCAAATTTAAAGCAGCGGACAAAGGAGTCATTTTTATATGC TAAAAATGATGTTGGAGACGAGTTTTATGATGGGATTCCTAGATATCCATCATCATCAATAAAATCAAGATCAATTCGCAGACAAGCAGCTGTTGCCAAG GTTTCGGAGGTTAGTTCACGTATAAGTAGAGCTGGCACTCTTGGACTAGGGAAAGCAGTGGAGGTCCTGGACACACTAGGGAGTAGCATCACAAATTTAA ACCCTAATATTTTTGCTTCTAGTGTAGCAACCAAGGGCAATGAACTTGGAATTTTAGCTTTTGAGGTAGCAAACACAGTTGTCAAGGGTTCCAACCTTAT GCAATCTCTTTCTATACGAAGTGTAAGTTATTTGAAAGAAGAGGTGCTTCCTTCAGAAGGCGTGCAAAATCTGATATCAAAAGATATGGATGAACTTTTG AGGATCGTTGCAGCTGACAAGAGAGAAGAGCTGAAAATATTTTCAGGAGAGGTGGTTCGTTTTGGAAATCGATGTAAAGATTCTCAATGGCACAACTTGG ACCGTTATTTTGAGAAAATTAGCAGAGTACAAACTCCTAGTAAGGGATTGCGGGAGGAGGCAGAATCCATAATAGAACTTTTAACGATTCTGGTTCAGTA TACAGCCGAGCTATACCATGAATTGCAAATTTTGGATAAAATGGAACAAGAATGTCAACAGAGGGAGGATGCTGCAGCTTCTAATCAGAAAGGAGAAAGC CCTGCAATGTTAAGGACAGAAATAAGAAACCAAAGAAAACGAATACAAAATGTAAAGAAGAAATCACTCTGGTCTAGAAGTTTGGAAGAGGTTATGGAGA AGTTTGTAGATATTGTCCATTTCTTAATCCTCGAGATAGGCAATGCATATGGTAGCTTCGATGATTCCATACAAGATAAAGAATCTGTGAGCAATCCTGC AAGATTGGGACCTGCTGGTCTTTCTTTACATTATGCAAATGTAGTTATGCAAATTGATAACCTTGTGGCACGATCAAGCTCCATGCCTCCAAATAGTAAG GATGCATTGTACCAGAACTTGCTGCCTGGTGTAAAATCAGCTCTGCGTTCCAAATTGCTATCTTTTCATGTCAAAGATGAGCTTACCATTACGGAAATTA AAGATGAGATGGAGAAGACATTGCAGTGGCTGGTTCCAATGTCCATTAATACAGCCAAAGCCCATCACGGTTTTGGTTGGGTAGGAGAGTGGGCAAGTAT CGGGTCTGAGCCCAATAGAAAGTCTGCTGCTGCAGCAGCTGACATAATCCGGATTGAAACACTCCACCACGCCGACAAGGAGAAAACAGAAGCCTATATT CTTGAACAGGTATTGTGGCTTCACCATCTTGTCAGAAAAACCAAGAGTGTTTCTGGTGGTGGTAGCACACTGGGTCAGAAGTCGAATCAGAAGCAAAAAC AAGAGTTGCCCAATGCACCCGAGTTGCCTGACACCATTGTAATGTCAGATGCGCCATCGCTAATAACCAATGACCAAACAATTTTGCTGGAAGCTAGTGA GAAAAAACAGATACTAGAAAACAGGAAGAGCCAGGACTACGACTCGGTGGATACCCAGTTGAGAGATGATGATGGGCCGAGTAAGAGCAACAGTCATTCC CCTCCAAGGGAAAATGAAGACTCAGCTACTGTAAAAAGTGTTCCTTCTGTGCTTCCCATCACTGATGTTGGTATTGATAAGGAGAACGAATCAGATACCA TTGACAGAGTTAATGTGCTCAAAAACGAAGGAAAGCATGGACCTGTTACTGCTAAGTAG
AA sequence Show only first row Show all	>Potri.001G305800.1 pacid=42793143 polypeptide=Potri.001G305800.1.p locus=Potri.001G305800 ID=Potri.001G305800.1.v4.1 annot-version=v4.1 MGGTCSKKSNASNKKSNPYAKSKGNGVDSYCNKPHISSTQQVKEKIEKKELQEANLKQRTKESFLYAKNDVGDEFYDGIPRYPSSSIKSRSIRRQAAVAK VSEVSSRISRAGTLGLGKAVEVLDTLGSSITNLNPNIFASSVATKGNELGILAFEVANTVVKGSNLMQSLSIRSVSYLKEEVLPSEGVQNLISKDMDELL RIVAADKREELKIFSGEVVRFGNRCKDSQWHNLDRYFEKISRVQTPSKGLREEAESIIELLTILVQYTAELYHELQILDKMEQECQQREDAAASNQKGES PAMLRTEIRNQRKRIQNVKKKSLWSRSLEEVMEKFVDIVHFLILEIGNAYGSFDDSIQDKESVSNPARLGPAGLSLHYANVVMQIDNLVARSSSMPPNSK DALYQNLLPGVKSALRSKLLSFHVKDELTITEIKDEMEKTLQWLVPMSINTAKAHHGFGWVGEWASIGSEPNRKSAAAAADIIRIETLHHADKEKTEAYI LEQVLWLHHLVRKTKSVSGGGSTLGQKSNQKQKQELPNAPELPDTIVMSDAPSLITNDQTILLEASEKKQILENRKSQDYDSVDTQLRDDDGPSKSNSHS PPRENEDSATVKSVPSVLPITDVGIDKENESDTIDRVNVLKNEGKHGPVTAK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	0	1
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.008G186800 [exp]	2.00	0.8779
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.019G131300 [exp]	2.23	0.8694
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	2.64	0.8847
AT5G47040		LON2	lon protease 2 (.1)		Potri.001G148400 [exp]	3.00	0.8751	LON.1
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	4.89	0.8535
AT5G51910	TCP	TCP19	TCP family transcription facto...		Potri.015G138200 [exp]	5.19	0.8152
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145532 [exp]	9.16	0.8531
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Potri.016G059150 [exp]	9.89	0.8305
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.002G106800 [exp]	10.58	0.8290
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.002G002400 [exp]	10.95	0.8254

Compare expression of checked genes

Potri.001G305800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.