Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63710 791 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G10290 585 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65240 583 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT1G71830 481 / 2e-163 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G33430 465 / 3e-157 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT1G34210 464 / 1e-156 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT3G25560 456 / 1e-153 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G13790 445 / 2e-149 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT5G16000 444 / 1e-148 NIK1 NSP-interacting kinase 1 (.1) AT2G23950 441 / 1e-147 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001800 [exp] 1033 / 0 AT5G63710 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G094500 [exp] 609 / 0 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G074200 [exp] 581 / 0 AT5G10290 855 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G083300 [exp] 482 / 1e-163 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 476 / 2e-161 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.008G110300 [exp] 464 / 1e-156 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.003G023000 [exp] 463 / 1e-156 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.010G043200 [exp] 463 / 2e-156 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.017G108000 [exp] 461 / 2e-155 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000629 [exp] 591 / 0 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10023146 [exp] 508 / 6e-177 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10030591 [exp] 466 / 3e-157 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10030898 [exp] 465 / 5e-157 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10020962 [exp] 456 / 2e-153 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10034350 [exp] 452 / 6e-152 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10019145 [exp] 444 / 6e-149 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 444 / 6e-149 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10015484 [exp] 442 / 7e-148 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005103 [exp] 442 / 1e-147 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G306000.1 pacid=42793440 polypeptide=Potri.001G306000.1.p locus=Potri.001G306000 ID=Potri.001G306000.1.v4.1 annot-version=v4.1 ATGACTGAAGTTAATAGTGAGCATCCAAGTGGTGGCAAGAGGTCTGCTGCTGAATCCTTCGGCTACACCAAATTCGGATACATGTTTGGAGTGTTCTCCA TCAGGAATCCTCTGAAACTAGTTATCAACTGTCTTGTTCTGCTCAATTTTTTACAAATCATTAATTCATCCAAGGAACCTGACACTGAAGGTGGTGCTTT AAGAGATCTTCTACTGGCACTAAATGATTCCAATGGACAAATAGATTGGGATCCTAATTTAGTGAGCCCTTGCTATAGTTGGACTAATGTCTATTGCAAA AACGGACATGTTGTATTCCTGAGCTTGAATTCACTTGGACTTTCAGGAACTCTTTCACCTGCAATCACTAAACTGAAGTTTTTGGTTTCCCTGGAATTAA GGAACAATAATCTATCAGGGTCCTTGCCTGATTATCTGGGCAACATGGTGCAACTAAAAAATCTGAATCTTGCCAGCAATAAATTCAGTGGTTCGATACC TGACACTTGGGATCAGCTATCCAATTTAAAATTTTTGGATGTCTCATCTAACAATTTAACAGGAAGAATACCAGATAAACTCTTTTCAGTTGCAACATTC AATTTTACAGCGACTTATATTGCTTGTGGCCTGAGCTTTGAAGAACCTTGCCTGTCAAGGTCTCCTCTTCCAGTTTCAACCAGGAAGTTAAGACTTAAAG TAATTGCAGCTTCTGCAAGCTGTGGTGCTTTCGGTCTACTGATACTTTTAGTTGTCTTGGCATACCGATATCAACAATTTCACAAAGAGAAAAATGATAT CTTTGTTGATGTTTCTGGCGAAGATGACCGCAAAATTTCATTTGGGCAGCTTAGAAGATTTTCATGGCGTGAGCTTCAACTTGCAACAGACAACTTCAGT GAAAGCAACATAATAGGACAAGGAGGGTTTGGAAAAGTTTACAAAGGTATCATCTCAGACAACATGAAAGTTGCTGTGAAACGCCTCGAAGATTATTACA GTCCTGGAGGAAAGGCTGCATTCCTGAGAGAAGTTCAACTTATTAGTGTTGCTGCTCATAAGAATCTTCTAAGGTTGATTGGATTCTGTACAACTTCATC TGAGAGAATCCTGGTGTATCCATATATGCAAAATCTTAGTGTTGCATACCACTTGAGAGATTTAAAGCCTGGCGAGAAAGGCTTGGACTGGCCAACGAGG AAACGCATTGCCTTTGGTGCAGCGCACGGCTTGGAATATCTACATGAGCATTGTAATCCTAAGATTATACACCGTGATTTAAAGGCTGCGAACATCCTAT TAGACGACAATTTTGAACCTGTTCTTGGAGATTTTGGGCTAGCGAAGCTGGTTGACACAAAATTCACTCATATTACAACTCAGGTGCGGGGTACCATGGG TCACATTGCCCCAGAATATTTATCCACCGGAAAATCATCAGAAAAGACAGATGTGTTCGGATATGGCATTACACTTCTTGAACTGGTAACTGGTCAGCGT GCAATAGACCTTTCTCGACTCGAGGAGGAAGAGGATGTTCTTCTGCTTGACTATATCAAGAAGTTGCTGAGGGAAAACAGGCTTGATGACGTAGTGGATG GAAACTTGGAAACTTATGACCGCAAAGAAGTCGAGACTATTGTCCAGGTTGCATTGCTGTGCACGCAGAGCTCACCTGAAGGCCGCCCCACAATGGCAGG AGTGGTGAAAATGCTGCAAGGAATAGGTCTGGCCGAGAGATGGGCAAAGCGGGAGCAGCATGGGGATGCTAGGAACCAAGAATTCTCACTCATGTCTCAG CAATATATTTGGTCCGAAGATTCGAGCATTGACCAAGAAGCTATACAATTGTCCAAGGCAAGATAA
AA sequence Show only first row Show all	>Potri.001G306000.1 pacid=42793440 polypeptide=Potri.001G306000.1.p locus=Potri.001G306000 ID=Potri.001G306000.1.v4.1 annot-version=v4.1 MTEVNSEHPSGGKRSAAESFGYTKFGYMFGVFSIRNPLKLVINCLVLLNFLQIINSSKEPDTEGGALRDLLLALNDSNGQIDWDPNLVSPCYSWTNVYCK NGHVVFLSLNSLGLSGTLSPAITKLKFLVSLELRNNNLSGSLPDYLGNMVQLKNLNLASNKFSGSIPDTWDQLSNLKFLDVSSNNLTGRIPDKLFSVATF NFTATYIACGLSFEEPCLSRSPLPVSTRKLRLKVIAASASCGAFGLLILLVVLAYRYQQFHKEKNDIFVDVSGEDDRKISFGQLRRFSWRELQLATDNFS ESNIIGQGGFGKVYKGIISDNMKVAVKRLEDYYSPGGKAAFLREVQLISVAAHKNLLRLIGFCTTSSERILVYPYMQNLSVAYHLRDLKPGEKGLDWPTR KRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDNFEPVLGDFGLAKLVDTKFTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQR AIDLSRLEEEEDVLLLDYIKKLLRENRLDDVVDGNLETYDRKEVETIVQVALLCTQSSPEGRPTMAGVVKMLQGIGLAERWAKREQHGDARNQEFSLMSQ QYIWSEDSSIDQEAIQLSKAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63710			Leucine-rich repeat protein ki...		Potri.001G306000 [exp]	0	1
AT4G09890			Protein of unknown function (D...		Potri.002G065200 [exp]	1.41	0.8317
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Potri.002G111700 [exp]	3.00	0.8345
AT2G35550	BBR_BPC	BPC7, BBR/BPC7,...	basic pentacysteine 7 (.1.2.3....		Potri.001G133900 [exp]	5.29	0.8148
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Potri.004G236500 [exp]	9.21	0.7956
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Potri.012G019400 [exp]	9.48	0.8154
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.003G192500 [exp]	10.24	0.7194
AT5G35732			unknown protein		Potri.014G162400 [exp]	12.96	0.7333
AT2G23260		UGT84B1	UDP-glucosyl transferase 84B1 ...		Potri.009G095500 [exp]	13.41	0.7518	ZOG1.18
AT1G35560	TCP	TCP23	TCP family transcription facto...		Potri.013G110700 [exp]	14.00	0.7710
AT1G75980			Single hybrid motif superfamil...		Potri.002G018100 [exp]	14.00	0.7461

Compare expression of checked genes

Potri.001G306000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.