Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13340 40 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001900 [exp] 92 / 2e-21 AT5G13340 94 / 1e-22 unknown protein Potri.001G211000 [exp] 55 / 1e-08 AT1G10890 76 / 8e-16 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043141 [exp] 49 / 1e-06 AT1G10890 143 / 5e-42 unknown protein Lus10035960 [exp] 40 / 0.0008 AT5G13340 152 / 5e-45 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15346 [poplar] [flax] ARGLU Arginine and glutamate-rich 1
Representative CDS sequence Show only first row Show all	>Potri.001G306100.1 pacid=42790265 polypeptide=Potri.001G306100.1.p locus=Potri.001G306100 ID=Potri.001G306100.1.v4.1 annot-version=v4.1 ATGGCTAGAAGCATCTCCCGGTCGCCGTCGTACCGGCGTAGGCGCTCACCGTCGCCAGCGGAAAAGCACCGTAGTAGAAGAAGCAGAAGGGCTGACCGCA GCCGATCTCCTTATTTTAATTCTCAATCCAGGAGAAGAAGTGATTCTGATTCTCCACCTCCTCGTCGCCATCGGAGCAGTCGTTCGCCCAGTTATAGGAG GCGTAAAAGCCGGTCTCCAACACCTCCTAGGCGGCGTAGAAGACATAGAAGTAGAAGTAGGAGTGGATCATTATCTCCATTGCCTAGGTCAAGAAGTCTA AGTATTGCTTCTACCAAAATTGCTATCGAGAAACTAAAGAAAGAGGAGGAAGAGAAGAAAAGGCGTCAACAAGAGGCTGTACTAAAACTATTAGAGGAAG AGACTGCAAGGAGACTGGAAGAATCCATTCGGAAAAATGTGGAAGAGAAGTTAAACTCTGAGGAAGTTCAGTTAGAAATAGAGAGGCGAATAGAAGAAGG TCGAAAGAAATTGTTTGATGATGTTGAAGCTCAACTTCATAAGGAAAAGGAAGCAGCGCTTGCTGAGGAAAGAAGGAAAGAAGAACAAGCTCGAAAAGAA AGAGAAGAGCTGGATAAGATGCTGGAAGAGAATAGGAGGAGGGTGGAAGAAGCACAGAGAAGAGAAGCCTTGGAGCAACAAAGGAAAGAGGAGGAACGAT TTCGTGAGTTAGAGCTGATCCAAAGACAAAAGGAAGAGGCTGCTTGGAGGAAAAAGCTGGAAGACGAAGAAGAACATGCAAACCAGATGAAACTGCTGGG TAAGAATAAATCTCGACAGAAGCAACCTTTCGGAATTGGTTTATGA
AA sequence Show only first row Show all	>Potri.001G306100.1 pacid=42790265 polypeptide=Potri.001G306100.1.p locus=Potri.001G306100 ID=Potri.001G306100.1.v4.1 annot-version=v4.1 MARSISRSPSYRRRRSPSPAEKHRSRRSRRADRSRSPYFNSQSRRRSDSDSPPPRRHRSSRSPSYRRRKSRSPTPPRRRRRHRSRSRSGSLSPLPRSRSL SIASTKIAIEKLKKEEEEKKRRQQEAVLKLLEEETARRLEESIRKNVEEKLNSEEVQLEIERRIEEGRKKLFDDVEAQLHKEKEAALAEERRKEEQARKE REELDKMLEENRRRVEEAQRREALEQQRKEEERFRELELIQRQKEEAAWRKKLEDEEEHANQMKLLGKNKSRQKQPFGIGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G306100 [exp]	0	1
					Potri.001G123250 [exp]	1.73	0.9062
					Potri.013G064900 [exp]	2.00	0.9122
AT4G17150			alpha/beta-Hydrolases superfam...		Potri.016G001000 [exp]	3.87	0.8434
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.001G001700 [exp]	5.29	0.8786
					Potri.015G112801 [exp]	6.00	0.8602
AT2G21150		XCT	XAP5 CIRCADIAN TIMEKEEPER, XAP...		Potri.004G168400 [exp]	8.83	0.8144
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	10.00	0.8806
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	11.48	0.8603
AT1G55535			unknown protein		Potri.001G001400 [exp]	15.29	0.7934
AT2G20410			RNA-binding ASCH domain protei...		Potri.013G045800 [exp]	16.58	0.8273

Compare expression of checked genes

Potri.001G306100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.