Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64730 489 / 1e-176 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 137 / 5e-38 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 127 / 2e-34 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 127 / 3e-33 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 107 / 1e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 103 / 1e-24 PRL1 pleiotropic regulatory locus 1 (.1) AT1G10580 102 / 4e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 100 / 8e-24 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 92 / 2e-20 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 88 / 2e-19 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148500 [exp] 145 / 3e-41 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 134 / 5e-37 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 129 / 3e-35 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 116 / 3e-29 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 110 / 8e-28 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 100 / 1e-23 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.010G064600 [exp] 98 / 1e-22 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G172800 [exp] 96 / 7e-22 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G206600 [exp] 86 / 1e-18 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003855 [exp] 546 / 0 AT5G64730 524 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002090 [exp] 546 / 0 AT5G64730 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 136 / 1e-37 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 135 / 2e-37 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 131 / 1e-35 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 130 / 2e-35 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10042076 [exp] 113 / 7e-28 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018081 [exp] 111 / 6e-27 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 103 / 2e-25 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 103 / 4e-25 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.001G306500.1 pacid=42792778 polypeptide=Potri.001G306500.1.p locus=Potri.001G306500 ID=Potri.001G306500.1.v4.1 annot-version=v4.1 ATGAGCGACGTCTCGGAACTGCCAAATAAGGAGGCAAACGTGCTGAAAGGTCACGAAGGAGGAGTCTTAGCCGCAAGATTCAACGGTGACGGAAATTATT GCCTGAGTTGCGGCAAAGACCGCACCATTCGTCTTTGGAATCCTCACCGCGGAATCCACATTAAGACCTACAAATCTCACGGTCGTGAAGTTCGCGATGT TCACGTCACCCAGGATAATTCGAAATTAGTTTCTTGTGGAGGAGACCGACAAGTGTTTTACTGGGATGTGGCTACTGGTCGTGTAATTCGGAAATTCCGA GGACATGGTAGTGAGGTGAATGCTGTGAAATTTAATGAGTATGCATCTGTTGTGGTATCAGCAGGTTATGATCAATCATTGCGTGCTTGGGATTGTAGAT CTCATAGTACTGAGCCAATTCAGATCATTGACACGTTTTCAGATAGTGTGATGTCTGTGTGTTTGACGAAAACTGAAATCATTGCTGGAAGTGTTGATGG TACTGTTAGAACATTCGACATTCGTATTGGGAGAGAAATATCTGATAACTTGGGGCATCCTGTCAACTGTATCTCGATGTCAAATGATGGTAACTGCATA TTAGCGAGTTGCTTGGATTCTACTTTGCGCCTATTGGACAGAACTACAGGCGAGCTTTTGCAAGAATATAAAGGACATATATGCAAGTCATACAAGTTGG ATTGCTGCCTCACCAACACTGACGCCCATGTAGCTGGTGGCTCAGAGGATGGCTACATTTACTTCTGGGATCTTGTGGATGCGTCTGTGTTGTCACGTTT CCGAGCTCATTCCTCAGTGGTAACAAGTGTGAGTTACCATCCAACTGACAACTGCATGGTAAGCGCCTCTGTAGATGGCACAATTAAGGTTTGGAAAACA TGA
AA sequence Show only first row Show all	>Potri.001G306500.1 pacid=42792778 polypeptide=Potri.001G306500.1.p locus=Potri.001G306500 ID=Potri.001G306500.1.v4.1 annot-version=v4.1 MSDVSELPNKEANVLKGHEGGVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTQDNSKLVSCGGDRQVFYWDVATGRVIRKFR GHGSEVNAVKFNEYASVVVSAGYDQSLRAWDCRSHSTEPIQIIDTFSDSVMSVCLTKTEIIAGSVDGTVRTFDIRIGREISDNLGHPVNCISMSNDGNCI LASCLDSTLRLLDRTTGELLQEYKGHICKSYKLDCCLTNTDAHVAGGSEDGYIYFWDLVDASVLSRFRAHSSVVTSVSYHPTDNCMVSASVDGTIKVWKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64730			Transducin/WD40 repeat-like su...		Potri.001G306500 [exp]	0	1
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.010G243100 [exp]	1.00	0.7698	Pt-SGJ3.2
AT4G35920		MCA1	mid1-complementing activity 1,...		Potri.010G184700 [exp]	3.00	0.7393
AT1G18470			Transmembrane Fragile-X-F-asso...		Potri.015G050300 [exp]	6.00	0.7075
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.002G118900 [exp]	7.41	0.7152
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Potri.018G008000 [exp]	9.74	0.6635
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.002G133700 [exp]	9.89	0.7001	BES1.2
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	12.00	0.7412
AT5G06080	AS2	LBD33	LOB domain-containing protein ...		Potri.010G200400 [exp]	12.00	0.6925	LBD33.1
AT4G33940			RING/U-box superfamily protein...		Potri.004G143900 [exp]	15.42	0.6359
AT5G03970			F-box associated ubiquitinatio...		Potri.019G013900 [exp]	15.49	0.6989

Compare expression of checked genes

Potri.001G306500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.