Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G002400 [exp] 308 / 2e-107 ND / Potri.001G307100 [exp] 286 / 1e-98 ND / Potri.001G306932 [exp] 252 / 2e-85 ND / Potri.002G067000 [exp] 214 / 2e-70 ND / Potri.005G193200 [exp] 210 / 8e-69 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034839 [exp] 275 / 3e-94 ND / Lus10042472 [exp] 258 / 1e-87 ND / Lus10026194 [exp] 255 / 1e-86 ND / Lus10042412 [exp] 251 / 3e-85 ND / Lus10011163 [exp] 251 / 4e-85 ND / Lus10008920 [exp] 249 / 5e-84 ND / Lus10028894 [exp] 245 / 1e-82 ND / Lus10042473 [exp] 248 / 5e-82 ND / Lus10043068 [exp] 237 / 1e-79 ND / Lus10026258 [exp] 236 / 5e-79 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF08787 [poplar] [flax] Alginate_lyase2 Alginate lyase
Representative CDS sequence Show only first row Show all	>Potri.001G307000.1 pacid=42790612 polypeptide=Potri.001G307000.1.p locus=Potri.001G307000 ID=Potri.001G307000.1.v4.1 annot-version=v4.1 ATGGCTTCGTTTTCCCACCTTGCTCTACCAATCACCATCAGTTTTCTTCCTCTCATCTGCCAGTCAATTGGCTGGCCAATAGATCCAACTCACGGCTTCA CACAGCTCCCATTTAACACATCTTTTTACCATATCCAAAAGCCTTACAACTTGCCTGAAACTGATCGGTATAGCTTCTTCAGTGGCATCCACAAGCTATG GGTGTACTCCACAGACGAACCTCTGTCCAAAAATAGCCCAACCAAGCCTCGAACAGAAATCATTATTAGTGGATATAATTATTCTTCTGGTGTGTGGCAA TTTGAAGGGTATGGATACGTGCCATGTGGAACATCAGGAGTTTGTATCATGCAAGTGTTTGGAGCTGGTGGGAATCATGCAACATCCTTGATGCTCAGAG TCTATAATGGTACACTATATTATTACAGGGAAGCGGCCATTGTTCCAAACATCTATGATAGATGGTTTCGAGTAAATGTGATCCATGATGTTGATGCTTC GAAAATTAAGGTCTTTATTGATGGGGTTTTCATGTATGAGGCACTTGGGCGTGGAGGGGAATTTCATTACTTCAAGTGTGGAGTTTATGCTCAGAATGAT GATTCTTCCTATATGGAGTCTCGATGGAAGGGAATCAAGATTCTGAAAAAAAGTGATTGA
AA sequence Show only first row Show all	>Potri.001G307000.1 pacid=42790612 polypeptide=Potri.001G307000.1.p locus=Potri.001G307000 ID=Potri.001G307000.1.v4.1 annot-version=v4.1 MASFSHLALPITISFLPLICQSIGWPIDPTHGFTQLPFNTSFYHIQKPYNLPETDRYSFFSGIHKLWVYSTDEPLSKNSPTKPRTEIIISGYNYSSGVWQ FEGYGYVPCGTSGVCIMQVFGAGGNHATSLMLRVYNGTLYYYREAAIVPNIYDRWFRVNVIHDVDASKIKVFIDGVFMYEALGRGGEFHYFKCGVYAQND DSSYMESRWKGIKILKKSD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.001G307000 [exp]	0	1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G126000 [exp]	2.64	0.8057
AT3G10985		WI12, ATWI-12, ...	ARABIDOPSIS THALIANA WOUND-IND...		Potri.013G153801 [exp]	15.23	0.7911
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Potri.004G110150 [exp]	26.55	0.7224
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G045200 [exp]	28.77	0.7578
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.004G055700 [exp]	29.29	0.7293
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Potri.005G189800 [exp]	35.21	0.7356
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Potri.014G088000 [exp]	69.60	0.7133	Pt-FRO1.1
AT1G16670			Protein kinase superfamily pro...		Potri.006G128500 [exp]	70.31	0.6933
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Potri.008G021766 [exp]	93.24	0.6627
AT5G44640		BGLU13	beta glucosidase 13 (.1)		Potri.004G109699 [exp]	96.15	0.6482

Compare expression of checked genes

Potri.001G307000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.