Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MSACAD1.1,CADL10
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39330 574 / 0 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT2G21730 531 / 0 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT2G21890 530 / 0 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT4G37970 451 / 2e-159 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G37980 443 / 2e-156 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G37990 442 / 7e-156 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT1G72680 349 / 2e-119 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT3G19450 342 / 2e-116 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 325 / 5e-110 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT5G63620 86 / 2e-18 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G078300 [exp] 496 / 5e-177 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.006G199100 [exp] 495 / 7e-177 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.016G065300 [exp] 487 / 2e-173 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.001G268600 [exp] 485 / 1e-172 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063400 [exp] 477 / 2e-169 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.001G372400 [exp] 424 / 1e-148 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.002G018300 [exp] 403 / 2e-140 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.011G148100 [exp] 346 / 3e-118 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.009G095800 [exp] 342 / 2e-116 AT3G19450 476 / 3e-169 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002089 [exp] 566 / 0 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10035956 [exp] 487 / 2e-173 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10025706 [exp] 483 / 5e-172 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10003854 [exp] 471 / 5e-168 AT4G39330 486 / 2e-174 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10023268 [exp] 469 / 2e-166 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10000143 [exp] 443 / 2e-157 AT4G39330 463 / 3e-165 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 406 / 1e-141 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10017285 [exp] 404 / 1e-140 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10019811 [exp] 371 / 5e-128 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10014104 [exp] 369 / 6e-127 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G307200.1 pacid=42788224 polypeptide=Potri.001G307200.1.p locus=Potri.001G307200 ID=Potri.001G307200.1.v4.1 annot-version=v4.1 ATGGCAAAATCACCAGAAGTAGAACATCCACATAAGGCTTTTGGCTGGGCTGCCAAAGATAGTTCTGGGGTCCTTTCTCCCTTTCATTTCTCAAGAAGGG ACAATGGAGTTGAAGATGTGACCATAAAAATCCTGTACTGTGGAGTTTGCCATTCGGACTTGCACGCTGCCAAGAATGAATGGGGGTTTTCCAGATATCC TTTGGTTCCTGGGCATGAAATTGTTGGTATTGTGACAAAAATTGGAAGCAATGTGAAGAAGTTCAAAGTGGACGATCAGGTTGGTGTTGGAGTACTGGTG AACTCCTGTAAGTCATGCGAGTATTGCGACCAGGACTTGGAGAATTACTGCCCTAAAATGATATTTACATACAATGCCCAAAACCATGATGGGACAAAAA CTTATGGTGGTTATTCTGATACAATTGTGGTTGACCAGCACTTTGTACTCCGTATTCCTGATAGCATGCCTGCTGATGGGGCTGCACCACTATTATGTGC TGGGATCACAGTGTACAGCCCAATGAAATATTATGGAATGACAGAACCAGGGAAGCATTTGGGAATCGTAGGATTGGGGGGGCTTGGACATGTTGCTGTG AAGATTGGTAAGGCCTTTGGTTTGAAAGTTACAGTCATCAGTTCATCATCAAGAAAGGAGAGCGAAGCACTTGATAGACTTGGTGCTGATTCATTCCTTG TGAGCAGTGACCCTGAGAAAATGAAGGCAGCATTTGGCACTATGGATTACATCATTGACACTGTGTCTGCAGTTCATGCCTTGGCTCCACTTCTTAGTCT GCTGAAGACAAATGGAAAACTTGTTACTTTGGGCTTGCCTGAGAAGCCCCTTGAGCTGCCTATCTTCCCTTTGGTCTTGGGGCGAAAGCTAGTTGGTGGA AGTGATATTGGAGGGGTGAAAGAGACTCAAGAGATGTTGGACTTCTGTGCGAAGCACAATATTACCTCAGATGTTGAGGTGATCCGAATGGATCAAATCA ACACAGCCATGGATAGGCTTGCCAAATCGGATGTCAGGTACCGGTTTGTGATTGATGTGGCCAACTCCCTGTCACAATCTCAGTTATGA
AA sequence Show only first row Show all	>Potri.001G307200.1 pacid=42788224 polypeptide=Potri.001G307200.1.p locus=Potri.001G307200 ID=Potri.001G307200.1.v4.1 annot-version=v4.1 MAKSPEVEHPHKAFGWAAKDSSGVLSPFHFSRRDNGVEDVTIKILYCGVCHSDLHAAKNEWGFSRYPLVPGHEIVGIVTKIGSNVKKFKVDDQVGVGVLV NSCKSCEYCDQDLENYCPKMIFTYNAQNHDGTKTYGGYSDTIVVDQHFVLRIPDSMPADGAAPLLCAGITVYSPMKYYGMTEPGKHLGIVGLGGLGHVAV KIGKAFGLKVTVISSSSRKESEALDRLGADSFLVSSDPEKMKAAFGTMDYIIDTVSAVHALAPLLSLLKTNGKLVTLGLPEKPLELPIFPLVLGRKLVGG SDIGGVKETQEMLDFCAKHNITSDVEVIRMDQINTAMDRLAKSDVRYRFVIDVANSLSQSQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.001G307200 [exp]	0	1	Pt-MSACAD1.1,CADL10
AT1G17100			SOUL heme-binding family prote...		Potri.010G044200 [exp]	8.24	0.7985
AT1G56700			Peptidase C15, pyroglutamyl pe...		Potri.005G005800 [exp]	10.95	0.8024
					Potri.001G410477 [exp]	16.97	0.8212
					Potri.001G174000 [exp]	22.00	0.8207
AT3G14067			Subtilase family protein (.1)		Potri.001G167300 [exp]	22.91	0.6951
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.010G043500 [exp]	23.45	0.8094
AT4G32480			Protein of unknown function (D...		Potri.013G129900 [exp]	27.82	0.8111
					Potri.018G110525 [exp]	29.25	0.8162
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.012G049300 [exp]	29.59	0.7409
AT5G45920			SGNH hydrolase-type esterase s...		Potri.011G063800 [exp]	31.60	0.7872

Compare expression of checked genes

Potri.001G307200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.