Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05520 1236 / 0 Sec23/Sec24 protein transport family protein (.1) AT3G23660 1214 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT4G14160 1197 / 0 Sec23/Sec24 protein transport family protein (.1.2.3) AT2G21630 824 / 0 Sec23/Sec24 protein transport family protein (.1) AT5G43670 629 / 0 Sec23/Sec24 protein transport family protein (.1) AT4G01810 117 / 9e-27 Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G003100 [exp] 1432 / 0 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.014G178500 [exp] 986 / 0 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G238500 [exp] 662 / 0 AT2G21630 767 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.010G078200 [exp] 645 / 0 AT5G43670 1136 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.008G161300 [exp] 636 / 0 AT5G43670 1115 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.002G187100 [exp] 133 / 9e-32 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G112600 [exp] 123 / 1e-28 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021963 [exp] 1292 / 0 AT1G05520 1321 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10041256 [exp] 1286 / 0 AT1G05520 1319 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10043359 [exp] 952 / 0 AT2G21630 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 942 / 0 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10022219 [exp] 640 / 0 AT5G43670 1098 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10008800 [exp] 527 / 8e-179 AT5G43670 912 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10021964 [exp] 454 / 1e-154 AT1G05520 486 / 9e-168 Sec23/Sec24 protein transport family protein (.1) Lus10008801 [exp] 461 / 7e-153 AT5G43670 809 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10007190 [exp] 131 / 3e-31 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 126 / 1e-29 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [poplar] [flax] ADF PF00626 [poplar] [flax] Gelsolin Gelsolin repeat CL0092 [poplar] [flax] PF04810 [poplar] [flax] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [poplar] [flax] vWA-like PF04811 [poplar] [flax] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [poplar] [flax] PF04815 [poplar] [flax] Sec23_helical Sec23/Sec24 helical domain CL0128 [poplar] [flax] PF08033 [poplar] [flax] Sec23_BS Sec23/Sec24 beta-sandwich domain
Representative CDS sequence Show only first row Show all	>Potri.001G307400.1 pacid=42792392 polypeptide=Potri.001G307400.1.p locus=Potri.001G307400 ID=Potri.001G307400.1.v4.1 annot-version=v4.1 ATGTCAGAAATCCCAAACACAGATCCAGAAGGCATAGATTCAGTCCGTATGACATGGAACAACTGGCCCAGAACCAAAGTCGAAGCATCCAAATGCGTTA TCCCTTTAGCCGCATCAATCTCCCCTATACGTCCACACTCAGAAATCCCTACTCTCACTTACCCTCCTCTCCGTTGCAAAACCTGCACATCCATCATGAA TTGCTTCTCGCGTGTCGATTTCACCGCTAAGATCTGGATCTGTCCTTTCTGCTACCAACGCAACCATTTTCCTCCCCACTATTCCATGATCTCCGAGACC AATCTCCCAGCTGAGTTGTATAGCCAGTATACGACGATAGAGTATACTTTAGGTGATAAGAATCATAACCCAGTTGGGGAAATTGATGCTAAGTCTGCGT TTGTGTTTGTTTTGGATACTTGTATGATTGAGGAAGAATTTGAGTATGTGAAATCGGAGGTTAAGAGGGCAATTGGGTTGTTACCGGAGAATGCAATGGT GGGTTTTGTGTCTTTTGGGACACAAGTGCAAGTTCATGAATTGGGGTTTAGTGATATGTCGAAAGTTTATGTTTTTAGAGGGACTAAAGAGATTAGTAAA GATCAGGTTATGGAGCAGTTAGGTATTGGTGTTGCTGGCAGGAGGAATGTTCCTGGTGCTGGTGTTGGTGGGTATCAGCAGCAGAAGGGGATGCATGTGC AGAATTCAGGTGTGACCCGGTTTTTATTGCCGGCATCTGACTGTGAATTTACGCTCAATTCGCTCTTGGATGAGTTGCAAACGGATCAATGGCCGGTGGC ACCAGGAACTCGGGCATCAAGGTGTACTGGAGTAGCATTGAGTGTTGCAGCTGGATTGCTTGGAGCTTGTTTGCCTGGTACTGGAGCTAGAATTGTAGCT TTAGTTGGTGGTCCTTGCACTGAAGGGCCAGGCACGATTATATCAAAAGACTTGTCTGATCCTGTACGTTCCCACAAGGATCTTGATAAGGATGCAGCAC CATATTTTAAGAAAGCAGTCAAATTTTATGATAGTCTTGCAAAGCAGCTTGTCAGTCAGGGTCATGTTTTGGACCTTTTTGCATCTGCTTTGGATCAGGT TGGGGTTGCAGAAATGAAAGTTGCGGTAGAAAGAACTGGTGGTCTTGTTGTTCTCTCAGAAAGTTTTGGACATTCTGTGTTTAAGGACTCCTTCAAGCGT GTATTTGAAAATGGAGAACATTCTCTTGGCCTCTGTTTTAATGGAACACTAGAGATTAACTGTTCAAAGGACATCAAAATTCAGGGGATTATTGGACCTT GCACCTCTATGGAGAAGAAAGGACCTAGTGTTGCTGATACTGTCATTGGTGAAGGGAATACAACGGCTTGGAAGATGTGTGGCCTTGATAAGAGTACTTG TCTGACTGTCTTCTTTGATCTTTCATCGAGTGAAAAGTCAAATAATCCTGGAGCTATGAATCCACAGTTATACTTACAGTTTCTCACAAGTTATCAAAAT CCCGAGGGTCTTATGTTGCTCCGGGTTACAACCGTCACTCGAAGATGGGTAGATAGTGCTGCTAACTCTGAGGAATTAGTTCAAGGTTTTGACCAAGAGA CTGCAGCTGTGGTAATGGCGAGATTAACATCTCTGAAAATGGAGGCAGAGGAAGGATTTGATGCCACTAGGTGGTTAGACCGAAATCTCATTCGTGTCTG TTCCAGATTTGGTGAATATCGGAAGGATGATCCAACATCCTTTACATTGAACTCGTTTTTCTCTTTCTTCCCTCAGTTTCTGTTTAATCTGCGAAGATCG CAATTTGTACAGGTTTTCAATAACAGCCCCGATGAGACAGCTTATTTCCGCATGTTGTTAAACCGTGAAAACATTACCAATGCCGCTGTCATGATTCAAC CATCTCTCATATCATATTCATTCAACTCACTGCCTCAACCTGCATTATTGGATGTCGCTTCTATTGGTGCTGATCGTATTCTCTTACTTGATTCATACTT CAGTGTTGTCATATTTCATGGAATGACAATAGCTCAGTGGCGTAACTTGGGTTACCAGAATCAGCCAGAGCACCAGGCATTTGCACAACTATTGCAAGCA CCCAAAGAAGATGCCCAAATGATCATTCATGATCGTTTCCCTGTTCCTAGATTGGTTGTATGTGATCAGCATGGATCCCAGGCAAGGTTCTTATTGGCAA AATTGAACCCATCAGCTACATACAATAATGCCAATGAGATGGCAGCTGGGTCGGACATAATATTCACAGATGATGTGAGCCTTCAAGTCTTCTTTGAGCA TCTTCAGAGGTTAGCTGTGCAGTCTTGA
AA sequence Show only first row Show all	>Potri.001G307400.1 pacid=42792392 polypeptide=Potri.001G307400.1.p locus=Potri.001G307400 ID=Potri.001G307400.1.v4.1 annot-version=v4.1 MSEIPNTDPEGIDSVRMTWNNWPRTKVEASKCVIPLAASISPIRPHSEIPTLTYPPLRCKTCTSIMNCFSRVDFTAKIWICPFCYQRNHFPPHYSMISET NLPAELYSQYTTIEYTLGDKNHNPVGEIDAKSAFVFVLDTCMIEEEFEYVKSEVKRAIGLLPENAMVGFVSFGTQVQVHELGFSDMSKVYVFRGTKEISK DQVMEQLGIGVAGRRNVPGAGVGGYQQQKGMHVQNSGVTRFLLPASDCEFTLNSLLDELQTDQWPVAPGTRASRCTGVALSVAAGLLGACLPGTGARIVA LVGGPCTEGPGTIISKDLSDPVRSHKDLDKDAAPYFKKAVKFYDSLAKQLVSQGHVLDLFASALDQVGVAEMKVAVERTGGLVVLSESFGHSVFKDSFKR VFENGEHSLGLCFNGTLEINCSKDIKIQGIIGPCTSMEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVFFDLSSSEKSNNPGAMNPQLYLQFLTSYQN PEGLMLLRVTTVTRRWVDSAANSEELVQGFDQETAAVVMARLTSLKMEAEEGFDATRWLDRNLIRVCSRFGEYRKDDPTSFTLNSFFSFFPQFLFNLRRS QFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPQPALLDVASIGADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLQA PKEDAQMIIHDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNANEMAAGSDIIFTDDVSLQVFFEHLQRLAVQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	0	1
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	1.00	0.7914	CEF.1
AT4G39690			unknown protein		Potri.005G080200 [exp]	2.00	0.7250
AT2G47960			unknown protein		Potri.004G040500 [exp]	3.16	0.6956
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078800 [exp]	6.48	0.7171	GN.2
AT4G32640			Sec23/Sec24 protein transport ...		Potri.013G035800 [exp]	7.14	0.7370	CEF.2
AT3G28720			unknown protein		Potri.004G123900 [exp]	7.93	0.7062
AT1G52320			unknown protein		Potri.003G054800 [exp]	8.36	0.6705
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	9.21	0.7205
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	11.83	0.7123
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	12.96	0.7063

Compare expression of checked genes

Potri.001G307400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.