Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09850 336 / 3e-114 Transcription elongation factor (TFIIS) family protein (.1) AT5G05140 86 / 3e-18 Transcription elongation factor (TFIIS) family protein (.1) AT3G10820 78 / 2e-15 Transcription elongation factor (TFIIS) family protein (.1), Transcription elongation factor (TFIIS) family protein (.2) AT2G38560 43 / 0.0003 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G003900 [exp] 588 / 0 AT5G09850 322 / 7e-109 Transcription elongation factor (TFIIS) family protein (.1) Potri.006G035500 [exp] 57 / 8e-09 AT5G05140 309 / 6e-101 Transcription elongation factor (TFIIS) family protein (.1) Potri.016G033300 [exp] 57 / 9e-09 AT5G05140 415 / 3e-142 Transcription elongation factor (TFIIS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002088 [exp] 313 / 2e-105 AT5G09850 276 / 9e-91 Transcription elongation factor (TFIIS) family protein (.1) Lus10003853 [exp] 311 / 2e-104 AT5G09850 268 / 4e-88 Transcription elongation factor (TFIIS) family protein (.1) Lus10027295 [exp] 86 / 3e-18 AT5G05140 369 / 1e-124 Transcription elongation factor (TFIIS) family protein (.1) Lus10039000 [exp] 66 / 2e-11 AT5G05140 382 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Lus10022735 [exp] 44 / 0.0001 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10014178 [exp] 44 / 0.0001 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025215 [exp] 42 / 0.0007 AT2G38560 384 / 8e-133 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [poplar] [flax] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Potri.001G307600.1 pacid=42793451 polypeptide=Potri.001G307600.1.p locus=Potri.001G307600 ID=Potri.001G307600.1.v4.1 annot-version=v4.1 ATGGATATTGATGATTTTAGATCAATATTGGAGAGTTCAGGTGTTGACGTTTGGAATTTTATTGATACAGCAATTGATGTGGCTTCTTTGGATTTTGGGT CTGAATTGAAGAGAAGGAGAGATGATATTGTGGCGAGATTATTTGCAGCATCAAGCTCATGTAGTAGATGTAGGGACCGGAGTTTTGATGATATTGACAT TAACAATACTGCTAATGGGAATGGAATGAAGGATCTTGCAGAGAAAGAGAGTAGCCATGAAGAAGAGAAAGGGAGAAGGGTGTATGCAGATTCTCCAGTA ACACCAAGGTCCGTTAATGGTGATGGTGATGATGAGGAACTGGATCCGTTTGGAGGGTTGTTTGATGATGAGCCGAAGAAGATTTTGGATATCAAGCAAC AGCTTGAAGATCTTGACCAGCCTGAAGATTCTTTGGTTGATTTGCTTCAAAGTTTAGCAGATATGGATATCACATTTCAGGCACTTAAGGAGACTGATAT TGGAAGGCATGTGAATCGATTGCGAAAGCATCCATCTAATGATGTTAAGAGATTAGTGAAGCAACTTGTCAGAAAATGGAAAGAAATTGTAGATGACTGG GTGAGGTTGAATCCACACGGAGAGCGTGCATCCTCTGGTTTAATGGCTTACGGGGACTCACCTCAGCAGAAGATTCCCCAGAATGGTCGTCACCAGGTTC CTGATTTTGCATACTCTCCCAATCCTCACAATGGGAGTTCTGGATCAGATAGGAATAATTCTGAACCAGAAAGAAAACCGAAACTGGCTCCTCCTCGAAA TGAAGCTCTGACCAAACCTATTAAAAAATCAGTTCCTGCATCTTCATCTGCTCCTCACAATGTACAGAGACAAAGAGAACAACCGAAAGAGAACAAATTT GATGCTGATCAAAAGTTTGCCTCGGCAAGTAAAAGGCTTCAAGCGAATTATAAGGAAGCTGAAAATGCCAAAAAACAAAGAACAATTCAAGTGATGGACA TTCACGAGATACCGAAACCCAAGAATAAGAATACCTTCTTTGCAAAGAACAGAGGTGGTGGCTCTCATCAAGGGAGGCACTGGTGA
AA sequence Show only first row Show all	>Potri.001G307600.1 pacid=42793451 polypeptide=Potri.001G307600.1.p locus=Potri.001G307600 ID=Potri.001G307600.1.v4.1 annot-version=v4.1 MDIDDFRSILESSGVDVWNFIDTAIDVASLDFGSELKRRRDDIVARLFAASSSCSRCRDRSFDDIDINNTANGNGMKDLAEKESSHEEEKGRRVYADSPV TPRSVNGDGDDEELDPFGGLFDDEPKKILDIKQQLEDLDQPEDSLVDLLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVKRLVKQLVRKWKEIVDDW VRLNPHGERASSGLMAYGDSPQQKIPQNGRHQVPDFAYSPNPHNGSSGSDRNNSEPERKPKLAPPRNEALTKPIKKSVPASSSAPHNVQRQREQPKENKF DADQKFASASKRLQANYKEAENAKKQRTIQVMDIHEIPKPKNKNTFFAKNRGGGSHQGRHW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09850			Transcription elongation facto...		Potri.001G307600 [exp]	0	1
AT1G24330			ARM repeat superfamily protein...		Potri.010G058000 [exp]	8.48	0.6405
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.010G184800 [exp]	11.95	0.7004
AT3G14460			LRR and NB-ARC domains-contain...		Potri.011G005700 [exp]	14.96	0.7086
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.004G070500 [exp]	15.49	0.7139
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121750 [exp]	16.12	0.7141
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.003G188700 [exp]	16.79	0.7417	SDG906,SUVH3.3
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.010G046100 [exp]	17.08	0.7244
AT4G24020		NLP7	NIN like protein 7 (.1)		Potri.003G143000 [exp]	17.74	0.7090
					Potri.005G089750 [exp]	32.07	0.6586
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.011G169600 [exp]	35.62	0.6590

Compare expression of checked genes

Potri.001G307600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.