Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09840 588 / 0 Putative endonuclease or glycosyl hydrolase (.1) AT5G64710 379 / 9e-117 Putative endonuclease or glycosyl hydrolase (.1.2) AT3G62210 156 / 3e-42 EDA32 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) AT3G62200 158 / 6e-40 Putative endonuclease or glycosyl hydrolase (.1) AT5G61190 154 / 6e-38 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1) AT5G61180 145 / 7e-38 Putative endonuclease or glycosyl hydrolase (.1) AT3G60940 125 / 7e-32 Putative endonuclease or glycosyl hydrolase (.1) AT3G61028 122 / 5e-31 Putative endonuclease or glycosyl hydrolase (.1.2) AT2G15560 109 / 9e-25 Putative endonuclease or glycosyl hydrolase (.1) AT3G62050 83 / 2e-18 Putative endonuclease or glycosyl hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004000 [exp] 1340 / 0 AT5G09840 406 / 2e-126 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003301 [exp] 169 / 5e-45 AT3G62200 276 / 2e-85 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003100 [exp] 161 / 1e-42 AT3G62200 280 / 1e-87 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003000 [exp] 161 / 8e-41 AT3G62210 250 / 9e-78 embryo sac development arrest 32, Putative endonuclease or glycosyl hydrolase (.1) Potri.005G003800 [exp] 159 / 2e-40 AT3G62200 465 / 2e-156 Putative endonuclease or glycosyl hydrolase (.1) Potri.013G003200 [exp] 157 / 3e-39 AT3G62200 258 / 8e-76 Putative endonuclease or glycosyl hydrolase (.1) Potri.004G140400 [exp] 124 / 2e-29 AT2G15560 545 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Potri.009G100600 [exp] 118 / 2e-27 AT2G15560 528 / 0.0 Putative endonuclease or glycosyl hydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033511 [exp] 645 / 0 AT5G09840 561 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10020866 [exp] 622 / 0 AT5G09840 565 / 0.0 Putative endonuclease or glycosyl hydrolase (.1) Lus10009982 [exp] 149 / 6e-37 AT3G62200 429 / 9e-142 Putative endonuclease or glycosyl hydrolase (.1) Lus10019845 [exp] 122 / 1e-28 AT2G15560 488 / 2e-169 Putative endonuclease or glycosyl hydrolase (.1) Lus10038949 [exp] 67 / 4e-12 AT3G62200 89 / 2e-20 Putative endonuclease or glycosyl hydrolase (.1) Lus10038041 [exp] 61 / 3e-09 AT3G62200 179 / 3e-49 Putative endonuclease or glycosyl hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [poplar] [flax] PIN PF01936 [poplar] [flax] NYN NYN domain CL0123 [poplar] [flax] HTH PF12872 [poplar] [flax] OST-HTH OST-HTH/LOTUS domain CL0123 [poplar] [flax] PF14418 [poplar] [flax] OHA OST-HTH Associated domain
Representative CDS sequence Show only first row Show all	>Potri.001G307700.5 pacid=42792092 polypeptide=Potri.001G307700.5.p locus=Potri.001G307700 ID=Potri.001G307700.5.v4.1 annot-version=v4.1 ATGATCATCTCCAAGCCCTTTTCTTCAAAAACCCTCCTTTCACTCACTTCAAAAAACCCATCTTCTTCACCATTATTGCCATATTCAATTTTCATCTCGC ACTTCTCAACATCATCACTAGCACCTCATCACTCCTACTCTCATTCGCTTTCCGACTCGAAAAATGTTAGGGTTTCAGTGTGGTGGGATATTGAGAACTG CAATGTGCCAAGTGGGGTTAATGTTTTTAGAGTGGCTCAAGCTATTACTGCAGCTCTTAGGGGTAATGGGATTAAAGGGCCTGTTCAAATTACAGCTTTT GGTGATGTTTCGCAACTTTCAAGGGCTAATCAGGAAGCACTTTCTTCGACTGGGATCAACTTGGCGCACATTCCTAATGGTGGAAAGAACAGTGCTGACA GGTCTCTTCTCGTTGATCTTATGTGTTGGGTTTCCCAAAATCCGCCACCTGCCCATCTTTTTCTGATTTCTGGTGATAGGGACTTTGCAAATGTTCTACA CCGTTTGAGGATGAACAACTACAATATATTGCTTGCTGCTAAAGATACTGCCCCTAGTGTTCTCTGCAGTGCTGCAAGCATCATGTGGCAGTGGGATTCT TTGGTCAAAGGGGAAAACCTATCTGGAAAGCATTTTAACCAACCCCCTGATGGTCCCTTTGCCTCTTGGTATGTCCATTATAAGGGACCACTAGAAGACC CCTTTGCAGTTGTTGAGCAACCAACATGTTTGAAGGTCGAGGATAAACCTGAGGCTAGTTCAGAGTCTGCAGTTCGTCCAATTCCGAAAGCAGTTATGAA GCAGCTTTGTCACATTTTGAGTTCATGTCCAAAAGGAATGTCAATTACTGACCTTCAAAGCGAGTTGGCAAAAAGTAGTGTGCCTGTTGATAAAGACTTG TATGGATATAAAGAGTTCTCCCGCTTTCTTTTATCCATGCCACATATATTGAGGCTCAAGAGTGATGGTGATGGTCGATTTGTTGTACATTGTGCCACTA CAAAAGCTCCTGAACCATTTCAGCTCAATCCATGCAAGTCTACACCTACTGCTGTTGACAATGGAAGGCAACACATTACCAGGTCTTCAAAGTCAAATGG TGAGGACGTTTCTGCTTCTGGGTCTGTGGATGGGAAGTTGTCATTGCCTTCTTCTCCTAAGCCAAATTTAAAAGCGCCCCCAACAATTATGCACCAACCC TCTCTTGCTGAGAAGTCTGTCAAAATGAATATTCAACAACCTCCAAAACAAATGGTACAGCCCCAGCCTTTAAAACAAATGGAACAACCCCCTGCAGTTG CTGAAAAGGCAGAAACGGTTAATGCAAAGATGATTGAGGATCATCTGCCTGCTGTGAAAGAACATGTTTCTTCAACTGAAGTGGGCTTTTTTAGGAAATT CTGGAGAAGATTGTTTGGTGGCAAGGTTGATGATTCAGAATTGAAAAGCGAGAATGTTCTGGTGGAATCTTTTGGAGAAAACTTGGTGAAGAAAAATGAG AACACTTTGGCAGAACATGATCGTTCTGGTGAGAGCCCACAAAAGAATTTTGAGAAAAAAAGCGTGGATTCTACATCTCAGGGTGATGATCCAGTGGATC CCACTGTGGAAACAACTCGGGAGAATAAAACTGCTACAAGTTCTGAACCACATGCTGAAATATTGAGGAAAAGTCCAGGTTTGTTTAACCAGATATTGGA TTGGTGTAAATTTGGGGGAGATAGTGCAGTTGCATCAAATGATCAACCTACTGTAATACATGGGCACATGAAGAGTGATGCGGGGAAACCTGAGGTTTTT TCTGAGGATTTGTTTTGGAGAGAAATGGAATCTTTTATTGTCATGAAGAGAGGATCACTTGTTATCTCACAATCCAGGACCAGGGAACAGTTAGCGCAAA ATCTGCAAAAGGAAGGACCTTTGGTTCTTAGATCTCTGAGTGAAAGTGATGTCCTTCAACTGGTGGATATGATAATATCGGAGAAGAAATGGGTAGAAGA ATGTCCATCTGAAGCTTTCCCTTTCAAGCTCTCTTGGTTTGTTGCACAGAGTACTGTGGGTGATTCTCGTGCTTCAAATGGACTGAGTTCTATATTTATG AGCGCCCTGTCAGAGTCTAACTTGCGGAGACAACCAGGACATGGAGATAAAAAGAGTCAGAGCATTTCTCACACTGGAGTGTCCTCACCTGTCTCTGTTA AAAACCCTTCTGAAAGGTCTAGGAGTGAGATACTAGGTGACTGTCAAAAGCTTGTCAAAGAGATATTGAAGGAATTTCCTGGAGGATATAATATGGACGC ATTTAGAAAGCTGTTCCTTGAGAGGTATGGCTATAACCTTGATGCCAAAAAGCTCGGTTACCCCAAGTTGGCATCCTTCCTTCAGATAATGCCTGGGGTG AAAATAGAATCCAATCTTATCATTCCTTGCAATGAAATGGCTAAACGTTCAAGCACAGGCAGAGCTGTTCTTCATAATACAAGTTCAGAAAGTGAGTTGT TTGATGCATCAAAGAAGGATGATGAATTGGACTCTACATGGGAAGAACTTGGTCCTGTTGACAACATGGGTTCTGGAAAAATGGCAATGCAATCAGCAAT AGGGATGAAAAGAAGACGTGAAAGAATGAGGCAACCATATCCTGAATATGAATCTCCTCTCTCAGATGATGAATATTCAGATTCAGAAGAGTCTGGTGTA GTAACTCGTCCTGTAGGGCAGGCAAAGCCTGGATTTATTGATGAAAACAGCTCACTACTGCAAATGCTTGATTCATGGGATGACAGTAAAGAAGGTGACG ATAAGAATCAGCCAGAAAATCTGGAAAGCGTGCTTGATTCTTTCACAAATGGTTTGAGGTCATCTTATTCATCCAGACTAGGCACGAAGATCAAAACTTC ACAAAGACCTCAAAAGAGCTATTCTTTTGTTGCAGATCCTGTAGAGAACAAAACAGAGCCGCTAGTTGATGGCATATTAGTTAGCTTGAAGAAACCAAAT GAGTCTAGGGTGGAAGGTTGA
AA sequence Show only first row Show all	>Potri.001G307700.5 pacid=42792092 polypeptide=Potri.001G307700.5.p locus=Potri.001G307700 ID=Potri.001G307700.5.v4.1 annot-version=v4.1 MIISKPFSSKTLLSLTSKNPSSSPLLPYSIFISHFSTSSLAPHHSYSHSLSDSKNVRVSVWWDIENCNVPSGVNVFRVAQAITAALRGNGIKGPVQITAF GDVSQLSRANQEALSSTGINLAHIPNGGKNSADRSLLVDLMCWVSQNPPPAHLFLISGDRDFANVLHRLRMNNYNILLAAKDTAPSVLCSAASIMWQWDS LVKGENLSGKHFNQPPDGPFASWYVHYKGPLEDPFAVVEQPTCLKVEDKPEASSESAVRPIPKAVMKQLCHILSSCPKGMSITDLQSELAKSSVPVDKDL YGYKEFSRFLLSMPHILRLKSDGDGRFVVHCATTKAPEPFQLNPCKSTPTAVDNGRQHITRSSKSNGEDVSASGSVDGKLSLPSSPKPNLKAPPTIMHQP SLAEKSVKMNIQQPPKQMVQPQPLKQMEQPPAVAEKAETVNAKMIEDHLPAVKEHVSSTEVGFFRKFWRRLFGGKVDDSELKSENVLVESFGENLVKKNE NTLAEHDRSGESPQKNFEKKSVDSTSQGDDPVDPTVETTRENKTATSSEPHAEILRKSPGLFNQILDWCKFGGDSAVASNDQPTVIHGHMKSDAGKPEVF SEDLFWREMESFIVMKRGSLVISQSRTREQLAQNLQKEGPLVLRSLSESDVLQLVDMIISEKKWVEECPSEAFPFKLSWFVAQSTVGDSRASNGLSSIFM SALSESNLRRQPGHGDKKSQSISHTGVSSPVSVKNPSERSRSEILGDCQKLVKEILKEFPGGYNMDAFRKLFLERYGYNLDAKKLGYPKLASFLQIMPGV KIESNLIIPCNEMAKRSSTGRAVLHNTSSESELFDASKKDDELDSTWEELGPVDNMGSGKMAMQSAIGMKRRRERMRQPYPEYESPLSDDEYSDSEESGV VTRPVGQAKPGFIDENSSLLQMLDSWDDSKEGDDKNQPENLESVLDSFTNGLRSSYSSRLGTKIKTSQRPQKSYSFVADPVENKTEPLVDGILVSLKKPN ESRVEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	0	1
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.006G024100 [exp]	1.41	0.9377
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	1.41	0.9407
AT1G45332			Translation elongation factor ...		Potri.001G123600 [exp]	2.00	0.9309
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	2.82	0.9257
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	3.00	0.9358
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	3.16	0.9167
AT5G46920			Intron maturase, type II famil...		Potri.001G147801 [exp]	3.16	0.9291
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	4.24	0.9270
AT4G19890			Pentatricopeptide repeat (PPR-...		Potri.015G121700 [exp]	4.89	0.9147
AT4G04670			Met-10+ like family protein / ...		Potri.004G015200 [exp]	6.32	0.9027

Compare expression of checked genes

Potri.001G307700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.