Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	N21L9
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G43650 207 / 4e-64 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 172 / 7e-50 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 158 / 9e-45 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 154 / 1e-43 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 154 / 3e-43 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 154 / 3e-43 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 142 / 5e-39 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 138 / 2e-37 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 137 / 6e-37 WAT1 Walls Are Thin 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004100 [exp] 514 / 0 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G192100 [exp] 232 / 2e-73 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G068300 [exp] 229 / 3e-72 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148600 [exp] 190 / 1e-57 AT5G64700 219 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 181 / 2e-53 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 176 / 2e-51 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 172 / 2e-50 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 170 / 5e-49 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 169 / 1e-48 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033510 [exp] 276 / 1e-90 AT5G64700 322 / 4e-109 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028585 [exp] 208 / 3e-64 AT1G43650 364 / 1e-125 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10018889 [exp] 204 / 9e-63 AT1G43650 372 / 1e-128 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028586 [exp] 194 / 2e-56 AT1G43650 314 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10008708 [exp] 184 / 2e-54 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 180 / 1e-52 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 178 / 3e-52 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 176 / 2e-50 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 173 / 3e-50 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 157 / 2e-44 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.001G307800.1 pacid=42791343 polypeptide=Potri.001G307800.1.p locus=Potri.001G307800 ID=Potri.001G307800.1.v4.1 annot-version=v4.1 ATGGGTGAAAAGAAGCCTTATTTGGCTGTGCTTTTAGTGCAATCAATCTATGGTGGAATGTTCATGATCTCAAAGGCTGCTTTCAATGGTGGTATGAACA ACTATGTGTTTGTCTTCTATAGACAGGCTGCGGCAACTCTTTTCTTAGCCCCTTTTGCCTTCTATTTCGAATGGAAAAATAGACCACCACTATCGTTTGT TACCTTCTGCAAGATTTTCTTCCTCGCTCTATTTGGAATTAGTTTCTGCTTGGATATATTTGGTATTGGCATCATCTATGCAACCGCGACATTGGCTGCT GCAATTTCAAACTGCCTTCCTGTCATCACTTTCTTCTTGGCACTTCTACTCAGGATGGAGGTGTTGAAATTTAAGACAGTCTCAGGGATTGCCAAGATTG CAGGGATAGTAGCATGTATAGCTGGCGCAGCAACCCTGGCCTTATACAAGGGCCCTCACTTTAATCTTATGTGCCTTCAGCACCTCTCTGGGAGTCATAA CAGCCAAGGAATTATTAGTCATATTCCTTCTAGCCAAACCAGGATAAAGGGTTGCTTCCTCTTGTTCTTGTCCAATATTTTATGGGGCTTATGGCTAGTG TTGCAGGTAAGAGTTTTGAAAAATTACCCATCAAAGCTTCTATTCATAACTCTTCAGTGCTTTCTAAGCACAATTCAGTTATTTGCCATTGCCGTTGCCG CTGAAAGAGATCCTCGTGAGTGGGAGCTGGGCTGGAACGTCAGACTTCTTGCTGTAGCTTACTGTGGAATTGTCGTGACTGGTGTTACATTTTACTTGCA AGCATGGGTTATAGAGAAGAAAGGGCCAGTTTTCTTGGCCATGTCAACTCCATTCACTTTGGTCTTTACAATGATTTTTTCTTCTATTCTCCTATGCGAG ACCATCACTTTGGGAAGTGTTTTGGGTGGGCTCATGCTGGTCGGAGGACTTTATAGTGTTCTATGGGGAAAAAGAAAAGAAGAGAAAATGAATGATGAGA ACAGTTTAAAAGCTGAAGCTGACAGAGAATGCTTAGAGTTGAAACAGGCAGTGCAAGCGGAACCTAAGGGCCCATTGTTAGTGTAA
AA sequence Show only first row Show all	>Potri.001G307800.1 pacid=42791343 polypeptide=Potri.001G307800.1.p locus=Potri.001G307800 ID=Potri.001G307800.1.v4.1 annot-version=v4.1 MGEKKPYLAVLLVQSIYGGMFMISKAAFNGGMNNYVFVFYRQAAATLFLAPFAFYFEWKNRPPLSFVTFCKIFFLALFGISFCLDIFGIGIIYATATLAA AISNCLPVITFFLALLLRMEVLKFKTVSGIAKIAGIVACIAGAATLALYKGPHFNLMCLQHLSGSHNSQGIISHIPSSQTRIKGCFLLFLSNILWGLWLV LQVRVLKNYPSKLLFITLQCFLSTIQLFAIAVAAERDPREWELGWNVRLLAVAYCGIVVTGVTFYLQAWVIEKKGPVFLAMSTPFTLVFTMIFSSILLCE TITLGSVLGGLMLVGGLYSVLWGKRKEEKMNDENSLKAEADRECLELKQAVQAEPKGPLLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.001G307800 [exp]	0	1	N21L9
					Potri.005G193800 [exp]	1.41	0.8356
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.012G020200 [exp]	6.32	0.8299	Pt-LAS.3
AT4G01240			S-adenosyl-L-methionine-depend...		Potri.004G116900 [exp]	20.63	0.7785
AT1G67340			HCP-like superfamily protein w...		Potri.012G097600 [exp]	20.88	0.6307
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.001G473200 [exp]	23.32	0.7708
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.009G098000 [exp]	27.45	0.7057
					Potri.019G109200 [exp]	29.39	0.6715
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Potri.015G008300 [exp]	31.08	0.7534
AT5G39130			RmlC-like cupins superfamily p...		Potri.004G179811 [exp]	32.84	0.6481
					Potri.007G088800 [exp]	34.78	0.7581

Compare expression of checked genes

Potri.001G307800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.